Hb_005081_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5081: 36092-36613
Sequence    

Annotation

kegg
ID pmum:103340649
description transcription factor WER-like
nr
ID XP_008242311.1
description PREDICTED: transcription factor WER-like [Prunus mume]
swissprot
ID P10290
description Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
trembl
ID M5WC03
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023789mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description tannin-related r2r3 myb transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46195: 35874-36501 , PASA_asmbl_46196: 36540-36637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005081_050 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
2 Hb_073680_010 0.0018536122 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_157950_010 0.0019665275 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
4 Hb_003424_040 0.003261 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
5 Hb_001922_140 0.0046989008 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000087_110 0.006824245 - - conserved hypothetical protein [Ricinus communis]
7 Hb_093541_010 0.0087882682 - - conserved hypothetical protein [Ricinus communis]
8 Hb_101724_010 0.0098331657 - - glutamate receptor family protein [Populus trichocarpa]
9 Hb_006198_160 0.0150985522 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
10 Hb_149495_010 0.0166382378 - - putative starch phosphorylase, partial [Sorghum bicolor]
11 Hb_027136_030 0.0171336535 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_015447_010 0.0173080776 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
13 Hb_002289_160 0.0175656895 - - Polygalacturonase precursor, putative [Ricinus communis]
14 Hb_099538_020 0.0233073846 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
15 Hb_003849_210 0.023576368 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
16 Hb_010261_070 0.0255989709 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
17 Hb_010128_140 0.0261201303 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
18 Hb_005914_190 0.0292687897 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
19 Hb_001552_010 0.029588181 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005356_020 0.0303166593 - - glutaredoxin, grx, putative [Ricinus communis]

Gene co-expression network

sample Hb_005081_050 Hb_005081_050 Hb_073680_010 Hb_073680_010 Hb_005081_050--Hb_073680_010 Hb_157950_010 Hb_157950_010 Hb_005081_050--Hb_157950_010 Hb_003424_040 Hb_003424_040 Hb_005081_050--Hb_003424_040 Hb_001922_140 Hb_001922_140 Hb_005081_050--Hb_001922_140 Hb_000087_110 Hb_000087_110 Hb_005081_050--Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_005081_050--Hb_093541_010 Hb_073680_010--Hb_157950_010 Hb_073680_010--Hb_003424_040 Hb_073680_010--Hb_001922_140 Hb_073680_010--Hb_000087_110 Hb_073680_010--Hb_093541_010 Hb_157950_010--Hb_003424_040 Hb_157950_010--Hb_001922_140 Hb_157950_010--Hb_000087_110 Hb_157950_010--Hb_093541_010 Hb_003424_040--Hb_001922_140 Hb_003424_040--Hb_000087_110 Hb_003424_040--Hb_093541_010 Hb_001922_140--Hb_000087_110 Hb_149495_010 Hb_149495_010 Hb_001922_140--Hb_149495_010 Hb_000087_110--Hb_093541_010 Hb_101724_010 Hb_101724_010 Hb_000087_110--Hb_101724_010 Hb_006198_160 Hb_006198_160 Hb_000087_110--Hb_006198_160 Hb_093541_010--Hb_101724_010 Hb_093541_010--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_093541_010--Hb_015447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.13219 19.6929 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis