Gene annotation
Transcriptome id Sobic.010G236300.1
Synonym ARF16, auxin response factor, SbARF24, Sb10g027790
Functional annotation "domain confirmed by Pfam database, expressed in root, expression induced BR treatment" (PubMedID : 20499123)
auxin response factor 18, putative, expressed
UniProt C5Z8A5
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G30080 : auxin response factor 16
RAP-DB (Rice) LOC_Os06g47150.3 : auxin response factor 18, putative, expressed
MaizeGDB (Corn) Zm00025a010550 , Zm00025a017609 , Zm00025a006580 , Zm00025a018176 , Zm00025a041848
Brachypodium KQK17233 , KQJ83629 , KQJ97130 , PNT69103
Barley HORVU5Hr1G071810.1 , HORVU6Hr1G026750.1 , HORVU2Hr1G089670.1 , HORVU2Hr1G089670.2 , HORVU2Hr1G089670.3 , HORVU2Hr1G089670.4 , HORVU6Hr1G058890.6 , HORVU6Hr1G058890.7 , HORVU6Hr1G058890.5 , HORVU6Hr1G058890.2 , HORVU6Hr1G058890.1 , HORVU7Hr1G101270.8 , HORVU7Hr1G101270.2 , HORVU7Hr1G101270.3 , HORVU7Hr1G101270.1 , HORVU7Hr1G101270.6 , HORVU7Hr1G101270.7 , HORVU7Hr1G101270.4 , HORVU7Hr1G101270.5 , HORVU1Hr1G041770.2 , HORVU1Hr1G041770.3 , HORVU1Hr1G041770.1 , HORVU1Hr1G041770.6 , HORVU1Hr1G041770.4 , HORVU1Hr1G041770.5 , HORVU6Hr1G058890.10
Wheat TraesCS1A02G156600 , TraesCS1B02G173700 , TraesCS7D02G436800 , TraesCS6B02G258800 , TraesCS2D02G376600 , TraesCS1D02G155100 , TraesCS6A02G222300 , TraesCS2A02G380300 , TraesCS2B02G397300 , TraesCS7A02G446900 , TraesCS7B02G346700 , TraesCS7B02G346700 , TraesCS6D02G212700
Populus PNT22576 , PNT18104 , PNT19000 , PNT19001 , PNT42422


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cDNA sequences
Sobic.010G236300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G084800 expressed protein -
2 Sobic.003G051000 expressed protein -
3 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
4 Sobic.009G201300 - -
5 Sobic.002G211800 AT-rich interaction region, putative, expressed -
6 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
7 Sobic.003G355900 prenylated rab acceptor, putative, expressed -
8 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
9 Sobic.003G418100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
10 Sobic.001G303100 expressed protein -
11 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
12 Sobic.002G346200 expressed protein -
13 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
14 Sobic.007G031900 OsFBX207 - F-box domain containing protein, expressed -
15 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
16 Sobic.003G217700 - -
17 Sobic.003G222900 OsFtsH9 FtsH protease, homologue of AtFtsH11, expressed K08955: ATP-dependent metalloprotease
18 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
19 Sobic.003G176000 lipase family protein, putative, expressed -
20 Sobic.003G392900 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic010G236300 Sobic010G236300 Sobic005G084800 Sobic005G084800 Sobic010G236300--Sobic005G084800 Sobic003G051000 Sobic003G051000 Sobic010G236300--Sobic003G051000 Sobic001G381600 Sobic001G381600 Sobic010G236300--Sobic001G381600 Sobic009G201300 Sobic009G201300 Sobic010G236300--Sobic009G201300 Sobic002G211800 Sobic002G211800 Sobic010G236300--Sobic002G211800 Sobic007G164000 Sobic007G164000 Sobic010G236300--Sobic007G164000 Sobic003G355900 Sobic003G355900 Sobic010G236300--Sobic003G355900 Sobic002G305000 Sobic002G305000 Sobic010G236300--Sobic002G305000 Sobic003G418100 Sobic003G418100 Sobic010G236300--Sobic003G418100 Sobic004G238200 Sobic004G238200 Sobic005G084800--Sobic004G238200 Sobic004G163800 Sobic004G163800 Sobic005G084800--Sobic004G163800 Sobic005G199400 Sobic005G199400 Sobic005G084800--Sobic005G199400 Sobic005G084800--Sobic003G355900 Sobic003G369400 Sobic003G369400 Sobic005G084800--Sobic003G369400 Sobic005G084500 Sobic005G084500 Sobic005G084800--Sobic005G084500 Sobic003G176000 Sobic003G176000 Sobic005G084800--Sobic003G176000 Sobic002G218500 Sobic002G218500 Sobic005G084800--Sobic002G218500 Sobic005G084800--Sobic010G236300 Sobic003G051000--Sobic007G164000 Sobic001G057700 Sobic001G057700 Sobic003G051000--Sobic001G057700 Sobic004G169000 Sobic004G169000 Sobic003G051000--Sobic004G169000 Sobic003G051000--Sobic005G084800 Sobic003G051000--Sobic010G236300 Sobic001G498000 Sobic001G498000 Sobic003G051000--Sobic001G498000 Sobic003G043300 Sobic003G043300 Sobic003G051000--Sobic003G043300 Sobic002G187700 Sobic002G187700 Sobic003G051000--Sobic002G187700 Sobic003G051000--Sobic003G355900 Sobic008G151100 Sobic008G151100 Sobic001G381600--Sobic008G151100 Sobic001G381600--Sobic009G201300 Sobic007G198300 Sobic007G198300 Sobic001G381600--Sobic007G198300 Sobic006G002300 Sobic006G002300 Sobic001G381600--Sobic006G002300 Sobic003G115900 Sobic003G115900 Sobic001G381600--Sobic003G115900 Sobic001G212300 Sobic001G212300 Sobic001G381600--Sobic001G212300 Sobic009G038900 Sobic009G038900 Sobic001G381600--Sobic009G038900 Sobic003G198800 Sobic003G198800 Sobic001G381600--Sobic003G198800 Sobic003G155100 Sobic003G155100 Sobic001G381600--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic009G201300--Sobic006G219600 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic008G001200 Sobic008G001200 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic009G201300--Sobic002G211800 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic007G164000--Sobic003G051000 Sobic007G164000--Sobic002G187700 Sobic001G481900 Sobic001G481900 Sobic007G164000--Sobic001G481900 Sobic003G190400 Sobic003G190400 Sobic007G164000--Sobic003G190400 Sobic001G128300 Sobic001G128300 Sobic007G164000--Sobic001G128300 Sobic008G059100 Sobic008G059100 Sobic007G164000--Sobic008G059100 Sobic007G164000--Sobic003G198800 Sobic001G390200 Sobic001G390200 Sobic007G164000--Sobic001G390200 Sobic007G164000--Sobic001G057700 Sobic003G355900--Sobic002G294800 Sobic002G359400 Sobic002G359400 Sobic003G355900--Sobic002G359400 Sobic003G355900--Sobic001G128300 Sobic001G451400 Sobic001G451400 Sobic003G355900--Sobic001G451400 Sobic001G389100 Sobic001G389100 Sobic003G355900--Sobic001G389100 Sobic009G068500 Sobic009G068500 Sobic003G355900--Sobic009G068500 Sobic003G355900--Sobic003G369400 Sobic003G355900--Sobic005G084800 Sobic003G355900--Sobic009G132700 Sobic002G305000--Sobic002G359400 Sobic002G305000--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic002G305000--Sobic003G354600 Sobic010G147100 Sobic010G147100 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic006G175800 Sobic006G175800 Sobic002G305000--Sobic006G175800 Sobic001G303100 Sobic001G303100 Sobic002G305000--Sobic001G303100 Sobic010G074300 Sobic010G074300 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic006G064100 Sobic006G064100 Sobic003G418100--Sobic006G064100 Sobic010G205100 Sobic010G205100 Sobic003G418100--Sobic010G205100 Sobic001G305600 Sobic001G305600 Sobic003G418100--Sobic001G305600 Sobic008G001900 Sobic008G001900 Sobic003G418100--Sobic008G001900 Sobic003G418100--Sobic002G305000 Sobic003G011300 Sobic003G011300 Sobic003G418100--Sobic003G011300 Sobic001G531500 Sobic001G531500 Sobic003G418100--Sobic001G531500 Sobic003G418100--Sobic003G354600 Sobic001G073900 Sobic001G073900 Sobic003G418100--Sobic001G073900
Octagon: transcription factors


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