Gene annotation
Transcriptome id Sobic.010G212200.1
Synonym Sb10g025890, GER2
Functional annotation synthase, putative, expressed
UniProt C5Z757
Pfam PF16363
Panther DB PTHR10366 PTHR10366:SF246
NCBI CDD KOG1431; GDP-L-fucose synthetase
KEGG Orthology K02377; TSTA3, GDP-L-fucose synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17890 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os06g44270.1 : synthase, putative, expressed
MaizeGDB (Corn) Zm00025a051634
Brachypodium KQK16850
Barley HORVU3Hr1G038710.1 , HORVU7Hr1G112930.1 , HORVU7Hr1G112930.2
Wheat TraesCS7D02G490100 , TraesCS7A02G502600 , TraesCS7B02G409700
Populus -


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cDNA sequences
Sobic.010G212200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G060300 expressed protein -
2 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
3 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
4 Sobic.001G145500 trafficking protein particle complex subunit 1, putative, expressed -
5 Sobic.001G451901 - -
6 Sobic.003G330500 peptidase, T1 family, putative, expressed -
7 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
8 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
9 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
10 Sobic.001G214900 expressed protein -
11 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
12 Sobic.001G105100 neighbor of COX4, putative, expressed -
13 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
14 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
15 Sobic.005G105500 expressed protein -
16 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
17 Sobic.009G168000 selT-like protein precursor, putative, expressed -
18 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
19 Sobic.003G030800 prenylated rab acceptor, putative, expressed -
20 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4


Gene co-expression network
sample Sobic010G212200 Sobic010G212200 Sobic001G060300 Sobic001G060300 Sobic010G212200--Sobic001G060300 Sobic004G262300 Sobic004G262300 Sobic010G212200--Sobic004G262300 Sobic001G392800 Sobic001G392800 Sobic010G212200--Sobic001G392800 Sobic001G145500 Sobic001G145500 Sobic010G212200--Sobic001G145500 Sobic001G451901 Sobic001G451901 Sobic010G212200--Sobic001G451901 Sobic003G330500 Sobic003G330500 Sobic010G212200--Sobic003G330500 Sobic004G164000 Sobic004G164000 Sobic010G212200--Sobic004G164000 Sobic002G402500 Sobic002G402500 Sobic010G212200--Sobic002G402500 Sobic001G240500 Sobic001G240500 Sobic010G212200--Sobic001G240500 Sobic001G342200 Sobic001G342200 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G214900 Sobic001G214900 Sobic001G060300--Sobic001G214900 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic010G194200 Sobic010G194200 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic004G202100 Sobic004G202100 Sobic004G262300--Sobic004G202100 Sobic004G262300--Sobic001G060300 Sobic004G262300--Sobic001G342200 Sobic001G031900 Sobic001G031900 Sobic004G262300--Sobic001G031900 Sobic010G038700 Sobic010G038700 Sobic004G262300--Sobic010G038700 Sobic009G001900 Sobic009G001900 Sobic004G262300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic004G262300--Sobic004G066800 Sobic002G131600 Sobic002G131600 Sobic004G262300--Sobic002G131600 Sobic007G092100 Sobic007G092100 Sobic004G262300--Sobic007G092100 Sobic002G262200 Sobic002G262200 Sobic001G392800--Sobic002G262200 Sobic003G217100 Sobic003G217100 Sobic001G392800--Sobic003G217100 Sobic002G090700 Sobic002G090700 Sobic001G392800--Sobic002G090700 Sobic001G035400 Sobic001G035400 Sobic001G392800--Sobic001G035400 Sobic004G159000 Sobic004G159000 Sobic001G392800--Sobic004G159000 Sobic004G344800 Sobic004G344800 Sobic001G392800--Sobic004G344800 Sobic001G392800--Sobic009G001900 Sobic001G392800--Sobic009G112900 Sobic001G392800--Sobic004G066800 Sobic001G444300 Sobic001G444300 Sobic001G145500--Sobic001G444300 Sobic005G105500 Sobic005G105500 Sobic001G145500--Sobic005G105500 Sobic001G338400 Sobic001G338400 Sobic001G145500--Sobic001G338400 Sobic001G281900 Sobic001G281900 Sobic001G145500--Sobic001G281900 Sobic007G176200 Sobic007G176200 Sobic001G145500--Sobic007G176200 Sobic004G010900 Sobic004G010900 Sobic001G145500--Sobic004G010900 Sobic006G252200 Sobic006G252200 Sobic001G145500--Sobic006G252200 Sobic001G145500--Sobic003G330500 Sobic002G029300 Sobic002G029300 Sobic001G145500--Sobic002G029300 Sobic001G110300 Sobic001G110300 Sobic001G451901--Sobic001G110300 Sobic001G451901--Sobic001G060300 Sobic004G184000 Sobic004G184000 Sobic001G451901--Sobic004G184000 Sobic001G129400 Sobic001G129400 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic001G451901--Sobic010G194200 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic001G451901--Sobic003G217100 Sobic004G224900 Sobic004G224900 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic004G138800 Sobic004G138800 Sobic003G330500--Sobic004G138800 Sobic001G096100 Sobic001G096100 Sobic003G330500--Sobic001G096100 Sobic003G131300 Sobic003G131300 Sobic004G164000--Sobic003G131300 Sobic007G019501 Sobic007G019501 Sobic004G164000--Sobic007G019501 Sobic004G164000--Sobic009G001900 Sobic004G164000--Sobic004G159000 Sobic004G164000--Sobic002G090700 Sobic004G164000--Sobic001G392800 Sobic001G309500 Sobic001G309500 Sobic004G164000--Sobic001G309500 Sobic004G164000--Sobic008G136800 Sobic008G025700 Sobic008G025700 Sobic004G164000--Sobic008G025700 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic002G402500--Sobic001G060300 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic006G028400 Sobic006G028400 Sobic001G240500--Sobic006G028400 Sobic006G183900 Sobic006G183900 Sobic001G240500--Sobic006G183900 Sobic001G240500--Sobic010G212200 Sobic009G157300 Sobic009G157300 Sobic001G240500--Sobic009G157300 Sobic007G157900 Sobic007G157900 Sobic001G240500--Sobic007G157900 Sobic002G271300 Sobic002G271300 Sobic001G240500--Sobic002G271300 Sobic004G071000 Sobic004G071000 Sobic001G240500--Sobic004G071000 Sobic002G365500 Sobic002G365500 Sobic001G240500--Sobic002G365500 Sobic001G284600 Sobic001G284600 Sobic001G240500--Sobic001G284600
Octagon: transcription factors


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