Gene annotation
Transcriptome id Sobic.008G004100.2
Synonym Sb08g000500
Functional annotation phosphatidate cytidylyltransferase, putative, expressed
UniProt A0A1B6PB21
Pfam -
Panther DB PTHR32523 PTHR32523:SF9
NCBI CDD KOG4453; Predicted ER membrane protein
KEGG Orthology K15892; farnesol kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58560 : Phosphatidate cytidylyltransferase family protein
RAP-DB (Rice) LOC_Os11g01450.1 : phosphatidate cytidylyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a023780 , Zm00025a033268
Brachypodium KQJ92638
Barley HORVU5Hr1G047890.1 , HORVU5Hr1G047890.5 , HORVU5Hr1G047890.8 , HORVU5Hr1G047890.3 , HORVU5Hr1G047890.2 , HORVU5Hr1G047890.7 , HORVU5Hr1G047890.6 , HORVU5Hr1G047890.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
2 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.009G213600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@green ripe-like, putative, expressed -
4 Sobic.006G230300 similar to LOC Os04g54190: cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@similar to LOC.Os04g54190:cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
5 Sobic.009G102300 hydrolase, acting on glycosyl bonds, putative, expressed K01227: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
6 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
7 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
8 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.001G476300 homeobox associated leucine zipper, putative, expressed -
10 Sobic.010G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.003G215200 expressed protein -
12 Sobic.001G187000 4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
13 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
14 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
15 Sobic.004G152200 glycosyltransferase, putative, expressed -
16 Sobic.001G250100 thaumatin, putative, expressed -
17 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
18 Sobic.009G246100 X8 domain containing protein, expressed -
19 Sobic.001G455100 expressed protein -
20 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -


Gene co-expression network
sample Sobic008G004100 Sobic008G004100 Sobic002G392800 Sobic002G392800 Sobic008G004100--Sobic002G392800 Sobic001G242800 Sobic001G242800 Sobic008G004100--Sobic001G242800 Sobic009G213600 Sobic009G213600 Sobic008G004100--Sobic009G213600 Sobic006G230300 Sobic006G230300 Sobic008G004100--Sobic006G230300 Sobic009G102300 Sobic009G102300 Sobic008G004100--Sobic009G102300 Sobic004G161900 Sobic004G161900 Sobic008G004100--Sobic004G161900 Sobic010G218300 Sobic010G218300 Sobic008G004100--Sobic010G218300 Sobic002G280700 Sobic002G280700 Sobic008G004100--Sobic002G280700 Sobic001G476300 Sobic001G476300 Sobic008G004100--Sobic001G476300 Sobic002G392800--Sobic001G242800 Sobic001G112700 Sobic001G112700 Sobic002G392800--Sobic001G112700 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700 Sobic001G242800--Sobic002G392800 Sobic002G319200 Sobic002G319200 Sobic001G242800--Sobic002G319200 Sobic004G152200 Sobic004G152200 Sobic001G242800--Sobic004G152200 Sobic001G242800--Sobic008G004100 Sobic001G242800--Sobic001G112700 Sobic009G126500 Sobic009G126500 Sobic001G242800--Sobic009G126500 Sobic001G432300 Sobic001G432300 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic009G213700 Sobic009G213700 Sobic009G213600--Sobic009G213700 Sobic003G414600 Sobic003G414600 Sobic009G213600--Sobic003G414600 Sobic009G213600--Sobic008G004100 Sobic009G213600--Sobic002G392800 Sobic008G062900 Sobic008G062900 Sobic009G213600--Sobic008G062900 Sobic010G151200 Sobic010G151200 Sobic009G213600--Sobic010G151200 Sobic009G246100 Sobic009G246100 Sobic009G213600--Sobic009G246100 Sobic001G453900 Sobic001G453900 Sobic009G213600--Sobic001G453900 Sobic009G213600--Sobic001G112700 Sobic001G299100 Sobic001G299100 Sobic006G230300--Sobic001G299100 Sobic003G417100 Sobic003G417100 Sobic006G230300--Sobic003G417100 Sobic006G092700 Sobic006G092700 Sobic006G230300--Sobic006G092700 Sobic008G191400 Sobic008G191400 Sobic006G230300--Sobic008G191400 Sobic003G215200 Sobic003G215200 Sobic006G230300--Sobic003G215200 Sobic010G028100 Sobic010G028100 Sobic006G230300--Sobic010G028100 Sobic003G000100 Sobic003G000100 Sobic006G230300--Sobic003G000100 Sobic010G194100 Sobic010G194100 Sobic006G230300--Sobic010G194100 Sobic003G017601 Sobic003G017601 Sobic006G230300--Sobic003G017601 Sobic010G045400 Sobic010G045400 Sobic009G102300--Sobic010G045400 Sobic009G102300--Sobic006G230300 Sobic002G114800 Sobic002G114800 Sobic009G102300--Sobic002G114800 Sobic009G102300--Sobic008G004100 Sobic009G102300--Sobic009G246100 Sobic009G102300--Sobic003G215200 Sobic006G130501 Sobic006G130501 Sobic009G102300--Sobic006G130501 Sobic009G102300--Sobic004G161900 Sobic009G102300--Sobic010G218300 Sobic003G368000 Sobic003G368000 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic001G218500 Sobic001G218500 Sobic004G161900--Sobic001G218500 Sobic003G079100 Sobic003G079100 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic010G218300--Sobic001G460400 Sobic002G283900 Sobic002G283900 Sobic010G218300--Sobic002G283900 Sobic010G218300--Sobic004G161900 Sobic010G218300--Sobic010G045400 Sobic006G160900 Sobic006G160900 Sobic010G218300--Sobic006G160900 Sobic010G218300--Sobic009G238900 Sobic010G218300--Sobic008G191400 Sobic009G221500 Sobic009G221500 Sobic010G218300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G218300--Sobic001G245800 Sobic009G088200 Sobic009G088200 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic007G152900 Sobic007G152900 Sobic002G280700--Sobic007G152900 Sobic010G032700 Sobic010G032700 Sobic002G280700--Sobic010G032700 Sobic003G396600 Sobic003G396600 Sobic002G280700--Sobic003G396600 Sobic001G371100 Sobic001G371100 Sobic002G280700--Sobic001G371100 Sobic003G294100 Sobic003G294100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic001G397000 Sobic001G397000 Sobic002G280700--Sobic001G397000 Sobic008G099100 Sobic008G099100 Sobic001G476300--Sobic008G099100 Sobic003G052900 Sobic003G052900 Sobic001G476300--Sobic003G052900 Sobic006G183900 Sobic006G183900 Sobic001G476300--Sobic006G183900 Sobic001G455100 Sobic001G455100 Sobic001G476300--Sobic001G455100 Sobic001G307600 Sobic001G307600 Sobic001G476300--Sobic001G307600 Sobic003G287200 Sobic003G287200 Sobic001G476300--Sobic003G287200 Sobic006G201000 Sobic006G201000 Sobic001G476300--Sobic006G201000 Sobic005G231300 Sobic005G231300 Sobic001G476300--Sobic005G231300 Sobic007G090472 Sobic007G090472 Sobic001G476300--Sobic007G090472
Octagon: transcription factors


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