Gene annotation
Transcriptome id Sobic.007G208300.1
Synonym Sb07g027550
Functional annotation peptidase, putative, expressed
UniProt C5YIP9
Pfam PF01546
Panther DB PTHR11014 PTHR11014:SF56
NCBI CDD KOG2275; Aminoacylase ACY1 and related metalloexopeptidases
KEGG Orthology K14677; aminoacylase
Gene Ontology GO:0016787; hydrolase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G38220 : Peptidase M20/M25/M40 family protein
RAP-DB (Rice) LOC_Os08g40110.2 : peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a005118
Brachypodium KQJ98946
Barley HORVU7Hr1G051070.2 , HORVU7Hr1G051070.1
Wheat TraesCS7D02G247000 , TraesCS7B02G143300 , TraesCS7A02G248200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G208300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G531400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
2 Sobic.001G291900 expressed protein -
3 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
4 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
6 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
7 Sobic.001G104800 expressed protein -
8 Sobic.006G132000 glycine-rich protein, putative, expressed -
9 Sobic.004G055500 inositol-1-monophosphatase, putative, expressed K01092: E3.1.3.25, IMPA, myo-inositol-1(or 4)-monophosphatase
10 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
11 Sobic.007G090400 expressed protein -
12 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
13 Sobic.002G272100 expressed protein -
14 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
15 Sobic.006G091300 glutathione S-transferase, N-terminal domain containing protein, expressed K03354: anaphase-promoting complex subunit 7
16 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
17 Sobic.001G025400 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
18 Sobic.008G119300 - -
19 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
20 Sobic.004G016400 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase


Gene co-expression network
sample Sobic007G208300 Sobic007G208300 Sobic001G531400 Sobic001G531400 Sobic007G208300--Sobic001G531400 Sobic001G291900 Sobic001G291900 Sobic007G208300--Sobic001G291900 Sobic003G085000 Sobic003G085000 Sobic007G208300--Sobic003G085000 Sobic004G336000 Sobic004G336000 Sobic007G208300--Sobic004G336000 Sobic004G301200 Sobic004G301200 Sobic007G208300--Sobic004G301200 Sobic001G295300 Sobic001G295300 Sobic007G208300--Sobic001G295300 Sobic001G104800 Sobic001G104800 Sobic007G208300--Sobic001G104800 Sobic006G132000 Sobic006G132000 Sobic007G208300--Sobic006G132000 Sobic004G055500 Sobic004G055500 Sobic007G208300--Sobic004G055500 Sobic001G531400--Sobic001G291900 Sobic001G531400--Sobic003G085000 Sobic001G531400--Sobic007G208300 Sobic007G090400 Sobic007G090400 Sobic001G531400--Sobic007G090400 Sobic001G531400--Sobic004G336000 Sobic006G106400 Sobic006G106400 Sobic001G531400--Sobic006G106400 Sobic001G122400 Sobic001G122400 Sobic001G531400--Sobic001G122400 Sobic001G531400--Sobic001G104800 Sobic006G055800 Sobic006G055800 Sobic001G531400--Sobic006G055800 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G291900--Sobic001G104800 Sobic001G291900--Sobic003G085000 Sobic001G291900--Sobic004G336000 Sobic005G002900 Sobic005G002900 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G309300 Sobic001G309300 Sobic001G291900--Sobic001G309300 Sobic001G291900--Sobic006G055800 Sobic001G291900--Sobic006G106400 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic010G255100 Sobic010G255100 Sobic003G085000--Sobic010G255100 Sobic003G085000--Sobic004G336000 Sobic003G085000--Sobic001G531400 Sobic003G085000--Sobic005G002900 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic004G336000--Sobic001G309300 Sobic001G495200 Sobic001G495200 Sobic004G336000--Sobic001G495200 Sobic008G073100 Sobic008G073100 Sobic004G336000--Sobic008G073100 Sobic004G336000--Sobic001G291900 Sobic003G432500 Sobic003G432500 Sobic004G336000--Sobic003G432500 Sobic004G336000--Sobic006G055800 Sobic004G011300 Sobic004G011300 Sobic004G336000--Sobic004G011300 Sobic004G336000--Sobic003G085000 Sobic003G387100 Sobic003G387100 Sobic004G336000--Sobic003G387100 Sobic004G301200--Sobic007G208300 Sobic006G091300 Sobic006G091300 Sobic004G301200--Sobic006G091300 Sobic004G301200--Sobic004G055500 Sobic004G144400 Sobic004G144400 Sobic004G301200--Sobic004G144400 Sobic004G301200--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic004G301200--Sobic001G424300 Sobic002G424100 Sobic002G424100 Sobic004G301200--Sobic002G424100 Sobic003G162900 Sobic003G162900 Sobic004G301200--Sobic003G162900 Sobic003G267500 Sobic003G267500 Sobic004G301200--Sobic003G267500 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G295300--Sobic001G104800 Sobic001G104800--Sobic001G291900 Sobic009G030900 Sobic009G030900 Sobic001G104800--Sobic009G030900 Sobic001G104800--Sobic001G368500 Sobic001G469933 Sobic001G469933 Sobic001G104800--Sobic001G469933 Sobic001G104800--Sobic001G122400 Sobic003G324700 Sobic003G324700 Sobic001G104800--Sobic003G324700 Sobic004G335800 Sobic004G335800 Sobic001G104800--Sobic004G335800 Sobic001G104800--Sobic007G090400 Sobic002G152800 Sobic002G152800 Sobic001G104800--Sobic002G152800 Sobic002G401800 Sobic002G401800 Sobic006G132000--Sobic002G401800 Sobic006G132000--Sobic003G432500 Sobic004G336200 Sobic004G336200 Sobic006G132000--Sobic004G336200 Sobic002G272100 Sobic002G272100 Sobic006G132000--Sobic002G272100 Sobic005G110400 Sobic005G110400 Sobic006G132000--Sobic005G110400 Sobic006G132000--Sobic006G106400 Sobic004G012900 Sobic004G012900 Sobic006G132000--Sobic004G012900 Sobic003G287900 Sobic003G287900 Sobic006G132000--Sobic003G287900 Sobic006G132000--Sobic008G073100 Sobic004G055500--Sobic001G291900 Sobic004G055500--Sobic006G106400 Sobic004G055500--Sobic006G091300 Sobic004G055500--Sobic001G531400 Sobic004G055500--Sobic003G085000 Sobic002G304100 Sobic002G304100 Sobic004G055500--Sobic002G304100 Sobic004G055500--Sobic007G208300 Sobic004G055500--Sobic004G301200 Sobic004G055500--Sobic004G336000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.