Gene annotation
Transcriptome id Sobic.006G262100.1
Synonym SbARF15, auxin response factor, ARF6, Sb06g032500
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt A0A1B6PP06
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G30330 : auxin response factor 6
RAP-DB (Rice) LOC_Os04g57610.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a057356 , Zm00025a009356 , Zm00025a002824
Brachypodium PNT62115
Barley HORVU3Hr1G096510.12 , HORVU3Hr1G096510.10 , HORVU3Hr1G096510.11 , HORVU3Hr1G096510.14 , HORVU3Hr1G096410.3 , HORVU3Hr1G096410.2 , HORVU3Hr1G096410.4 , HORVU3Hr1G096510.13 , HORVU2Hr1G121110.29 , HORVU2Hr1G121110.28 , HORVU2Hr1G121110.27 , HORVU2Hr1G121110.26 , HORVU2Hr1G121110.21 , HORVU2Hr1G121110.34 , HORVU2Hr1G121110.35 , HORVU2Hr1G121110.36 , HORVU2Hr1G121110.37 , HORVU2Hr1G121110.30 , HORVU2Hr1G121110.31 , HORVU2Hr1G121110.32 , HORVU2Hr1G121110.33 , HORVU3Hr1G096510.1 , HORVU3Hr1G096510.2 , HORVU3Hr1G096510.3 , HORVU3Hr1G096510.4 , HORVU3Hr1G096510.5 , HORVU3Hr1G096510.6 , HORVU3Hr1G096510.7 , HORVU3Hr1G096510.8 , HORVU3Hr1G096510.9
Wheat TraesCS2A02G547800 , TraesCS2B02G578500 , TraesCS2D02G548900
Populus PNT40109 , PNT40108 , PNT40107 , PNT40106 , PNT40105 , PNS96828 , PNS96829 , PNS96830


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G144100 - -
2 Sobic.006G067700 "protein kinase (like ACGVIII kinase called KIPK, a KCBP-interacting protein kinase)"(PubMedID : 28676627)@AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
4 Sobic.002G162000 - -
5 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
6 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
7 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
8 Sobic.001G395200 cyclin-related protein, putative, expressed -
9 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
10 Sobic.008G136100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
11 Sobic.008G048966 - -
12 Sobic.004G135500 - -
13 Sobic.002G002100 expressed protein -
14 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
15 Sobic.003G104100 expressed protein -
16 Sobic.008G001300 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
17 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
18 Sobic.001G315400 expressed protein -
19 Sobic.005G204100 kelch repeat protein, putative, expressed -
20 Sobic.009G141700 expressed protein -


Gene co-expression network
sample Sobic006G262100 Sobic006G262100 Sobic004G144100 Sobic004G144100 Sobic006G262100--Sobic004G144100 Sobic006G067700 Sobic006G067700 Sobic006G262100--Sobic006G067700 Sobic001G494100 Sobic001G494100 Sobic006G262100--Sobic001G494100 Sobic002G162000 Sobic002G162000 Sobic006G262100--Sobic002G162000 Sobic002G098500 Sobic002G098500 Sobic006G262100--Sobic002G098500 Sobic002G216600 Sobic002G216600 Sobic006G262100--Sobic002G216600 Sobic006G257200 Sobic006G257200 Sobic006G262100--Sobic006G257200 Sobic001G395200 Sobic001G395200 Sobic006G262100--Sobic001G395200 Sobic002G143200 Sobic002G143200 Sobic006G262100--Sobic002G143200 Sobic004G144100--Sobic002G216600 Sobic009G200000 Sobic009G200000 Sobic004G144100--Sobic009G200000 Sobic004G144100--Sobic006G262100 Sobic004G144100--Sobic001G395200 Sobic008G048966 Sobic008G048966 Sobic004G144100--Sobic008G048966 Sobic006G201600 Sobic006G201600 Sobic004G144100--Sobic006G201600 Sobic008G001300 Sobic008G001300 Sobic004G144100--Sobic008G001300 Sobic007G142900 Sobic007G142900 Sobic004G144100--Sobic007G142900 Sobic002G002100 Sobic002G002100 Sobic004G144100--Sobic002G002100 Sobic003G104100 Sobic003G104100 Sobic006G067700--Sobic003G104100 Sobic009G148200 Sobic009G148200 Sobic006G067700--Sobic009G148200 Sobic006G067700--Sobic001G395200 Sobic010G065800 Sobic010G065800 Sobic006G067700--Sobic010G065800 Sobic001G217100 Sobic001G217100 Sobic006G067700--Sobic001G217100 Sobic003G323300 Sobic003G323300 Sobic006G067700--Sobic003G323300 Sobic006G067700--Sobic002G098500 Sobic006G067700--Sobic006G262100 Sobic008G136100 Sobic008G136100 Sobic006G067700--Sobic008G136100 Sobic006G046600 Sobic006G046600 Sobic001G494100--Sobic006G046600 Sobic008G169400 Sobic008G169400 Sobic001G494100--Sobic008G169400 Sobic005G204100 Sobic005G204100 Sobic001G494100--Sobic005G204100 Sobic004G227500 Sobic004G227500 Sobic001G494100--Sobic004G227500 Sobic003G277900 Sobic003G277900 Sobic001G494100--Sobic003G277900 Sobic001G494100--Sobic006G262100 Sobic001G494100--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic001G494100--Sobic004G199700 Sobic001G315400 Sobic001G315400 Sobic001G494100--Sobic001G315400 Sobic006G272500 Sobic006G272500 Sobic002G162000--Sobic006G272500 Sobic002G142500 Sobic002G142500 Sobic002G162000--Sobic002G142500 Sobic007G187400 Sobic007G187400 Sobic002G162000--Sobic007G187400 Sobic009G124800 Sobic009G124800 Sobic002G162000--Sobic009G124800 Sobic008G015200 Sobic008G015200 Sobic002G162000--Sobic008G015200 Sobic002G162000--Sobic006G262100 Sobic002G162000--Sobic005G204100 Sobic002G370400 Sobic002G370400 Sobic002G162000--Sobic002G370400 Sobic002G162000--Sobic002G002100 Sobic008G038200 Sobic008G038200 Sobic002G098500--Sobic008G038200 Sobic007G065300 Sobic007G065300 Sobic002G098500--Sobic007G065300 Sobic003G096300 Sobic003G096300 Sobic002G098500--Sobic003G096300 Sobic002G098500--Sobic005G204100 Sobic010G135300 Sobic010G135300 Sobic002G098500--Sobic010G135300 Sobic010G020600 Sobic010G020600 Sobic002G098500--Sobic010G020600 Sobic002G098500--Sobic002G216600 Sobic001G221900 Sobic001G221900 Sobic002G098500--Sobic001G221900 Sobic007G032100 Sobic007G032100 Sobic002G098500--Sobic007G032100 Sobic002G216600--Sobic005G204100 Sobic001G384700 Sobic001G384700 Sobic002G216600--Sobic001G384700 Sobic002G216600--Sobic004G144100 Sobic009G259500 Sobic009G259500 Sobic002G216600--Sobic009G259500 Sobic002G216600--Sobic004G199700 Sobic001G079900 Sobic001G079900 Sobic002G216600--Sobic001G079900 Sobic009G141700 Sobic009G141700 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic006G257200--Sobic002G142500 Sobic006G241800 Sobic006G241800 Sobic006G257200--Sobic006G241800 Sobic002G362700 Sobic002G362700 Sobic006G257200--Sobic002G362700 Sobic002G293700 Sobic002G293700 Sobic006G257200--Sobic002G293700 Sobic003G078300 Sobic003G078300 Sobic006G257200--Sobic003G078300 Sobic001G425700 Sobic001G425700 Sobic006G257200--Sobic001G425700 Sobic002G001100 Sobic002G001100 Sobic006G257200--Sobic002G001100 Sobic004G164700 Sobic004G164700 Sobic006G257200--Sobic004G164700 Sobic006G257200--Sobic010G135300 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic010G149600 Sobic010G149600 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic007G125700 Sobic007G125700 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G395200--Sobic001G079900 Sobic001G385400 Sobic001G385400 Sobic002G143200--Sobic001G385400 Sobic006G140600 Sobic006G140600 Sobic002G143200--Sobic006G140600 Sobic008G088842 Sobic008G088842 Sobic002G143200--Sobic008G088842 Sobic002G143200--Sobic002G098500 Sobic002G143200--Sobic008G015200 Sobic003G435500 Sobic003G435500 Sobic002G143200--Sobic003G435500 Sobic001G367100 Sobic001G367100 Sobic002G143200--Sobic001G367100 Sobic004G341700 Sobic004G341700 Sobic002G143200--Sobic004G341700 Sobic008G192700 Sobic008G192700 Sobic002G143200--Sobic008G192700
Octagon: transcription factors


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