Gene annotation
Transcriptome id Sobic.006G230500.1
Synonym Sb06g029830
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5YGP9
Pfam PF12609
Panther DB PTHR33090 PTHR33090:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g54210.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G230500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086200 GRAM domain containing protein, expressed -
2 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
3 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.001G387900 Chaperone - similar to Cluster: DnaJ domain containing protein(PubMedID : 24655390)@ Oryza sativa(PubMedID : 27586543)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 24655390)@chaperone protein dnaJ, putative, expressed -
5 Sobic.004G177700 AIG1, putative, expressed -
6 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.002G423300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G349700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-15 - C2H2 zinc finger protein, expressed -
11 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
12 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
13 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
16 Sobic.003G369100 AP2 domain containing protein, expressed -
17 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
18 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
19 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
20 Sobic.001G138600 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G230500 Sobic006G230500 Sobic010G086200 Sobic010G086200 Sobic006G230500--Sobic010G086200 Sobic009G200700 Sobic009G200700 Sobic006G230500--Sobic009G200700 Sobic003G382800 Sobic003G382800 Sobic006G230500--Sobic003G382800 Sobic001G387900 Sobic001G387900 Sobic006G230500--Sobic001G387900 Sobic004G177700 Sobic004G177700 Sobic006G230500--Sobic004G177700 Sobic001G320900 Sobic001G320900 Sobic006G230500--Sobic001G320900 Sobic003G148600 Sobic003G148600 Sobic006G230500--Sobic003G148600 Sobic002G423300 Sobic002G423300 Sobic006G230500--Sobic002G423300 Sobic010G217800 Sobic010G217800 Sobic006G230500--Sobic010G217800 Sobic006G267200 Sobic006G267200 Sobic010G086200--Sobic006G267200 Sobic004G065500 Sobic004G065500 Sobic010G086200--Sobic004G065500 Sobic004G321300 Sobic004G321300 Sobic010G086200--Sobic004G321300 Sobic009G141800 Sobic009G141800 Sobic010G086200--Sobic009G141800 Sobic009G129000 Sobic009G129000 Sobic010G086200--Sobic009G129000 Sobic009G143400 Sobic009G143400 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic009G033700 Sobic009G033700 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic002G140300 Sobic002G140300 Sobic009G200700--Sobic002G140300 Sobic009G036100 Sobic009G036100 Sobic009G200700--Sobic009G036100 Sobic003G324400 Sobic003G324400 Sobic009G200700--Sobic003G324400 Sobic002G356101 Sobic002G356101 Sobic009G200700--Sobic002G356101 Sobic006G165100 Sobic006G165100 Sobic009G200700--Sobic006G165100 Sobic001G040200 Sobic001G040200 Sobic009G200700--Sobic001G040200 Sobic009G200700--Sobic009G129000 Sobic009G200700--Sobic006G230500 Sobic001G258300 Sobic001G258300 Sobic009G200700--Sobic001G258300 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic004G141200 Sobic004G141200 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic001G108200 Sobic001G108200 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic002G068600 Sobic002G068600 Sobic003G382800--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G382800--Sobic003G086600 Sobic003G382800--Sobic003G148600 Sobic001G387900--Sobic001G108200 Sobic001G308300 Sobic001G308300 Sobic001G387900--Sobic001G308300 Sobic001G387900--Sobic004G141200 Sobic001G387900--Sobic003G382800 Sobic001G387900--Sobic003G086600 Sobic006G158600 Sobic006G158600 Sobic001G387900--Sobic006G158600 Sobic003G078100 Sobic003G078100 Sobic001G387900--Sobic003G078100 Sobic003G369100 Sobic003G369100 Sobic001G387900--Sobic003G369100 Sobic004G304625 Sobic004G304625 Sobic001G387900--Sobic004G304625 Sobic006G173900 Sobic006G173900 Sobic004G177700--Sobic006G173900 Sobic002G393000 Sobic002G393000 Sobic004G177700--Sobic002G393000 Sobic006G275200 Sobic006G275200 Sobic004G177700--Sobic006G275200 Sobic010G099900 Sobic010G099900 Sobic004G177700--Sobic010G099900 Sobic009G008900 Sobic009G008900 Sobic004G177700--Sobic009G008900 Sobic004G177700--Sobic010G086200 Sobic010G149300 Sobic010G149300 Sobic004G177700--Sobic010G149300 Sobic004G177700--Sobic006G230500 Sobic002G414600 Sobic002G414600 Sobic004G177700--Sobic002G414600 Sobic009G036000 Sobic009G036000 Sobic001G320900--Sobic009G036000 Sobic003G144700 Sobic003G144700 Sobic001G320900--Sobic003G144700 Sobic009G169000 Sobic009G169000 Sobic001G320900--Sobic009G169000 Sobic001G391500 Sobic001G391500 Sobic001G320900--Sobic001G391500 Sobic001G320900--Sobic003G148600 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic003G148600--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic001G107800 Sobic001G107800 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic003G334600 Sobic003G334600 Sobic002G423300--Sobic003G334600 Sobic002G423300--Sobic003G369100 Sobic008G136400 Sobic008G136400 Sobic002G423300--Sobic008G136400 Sobic002G055600 Sobic002G055600 Sobic002G423300--Sobic002G055600 Sobic009G234100 Sobic009G234100 Sobic002G423300--Sobic009G234100 Sobic002G333400 Sobic002G333400 Sobic002G423300--Sobic002G333400 Sobic004G208700 Sobic004G208700 Sobic002G423300--Sobic004G208700 Sobic004G237800 Sobic004G237800 Sobic002G423300--Sobic004G237800 Sobic003G345100 Sobic003G345100 Sobic002G423300--Sobic003G345100 Sobic002G415600 Sobic002G415600 Sobic010G217800--Sobic002G415600 Sobic006G230900 Sobic006G230900 Sobic010G217800--Sobic006G230900 Sobic010G217800--Sobic003G144700 Sobic010G217800--Sobic003G123600 Sobic006G231200 Sobic006G231200 Sobic010G217800--Sobic006G231200 Sobic006G231100 Sobic006G231100 Sobic010G217800--Sobic006G231100 Sobic010G217800--Sobic006G267200 Sobic010G220200 Sobic010G220200 Sobic010G217800--Sobic010G220200 Sobic008G177800 Sobic008G177800 Sobic010G217800--Sobic008G177800
Octagon: transcription factors


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