Gene annotation
Transcriptome id Sobic.005G115600.2
Synonym Sb05g016740
Functional annotation 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
UniProt C5Y2F0
Pfam PF03446 PF00393
Panther DB PTHR11811 PTHR11811:SF33
NCBI CDD -
KEGG Orthology K00033; PGD, gnd, 6-phosphogluconate dehydrogenase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0006098pentose-phosphate shunt


Orthologs (automatic annotation)
TAIR AT5G41670 : 6-phosphogluconate dehydrogenase family protein
RAP-DB (Rice) LOC_Os11g29400.1 : 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
MaizeGDB (Corn) Zm00025a029733
Brachypodium PNT76838 , PNT76840 , PNT76839
Barley HORVU1Hr1G080480.3 , HORVU1Hr1G080480.2 , HORVU1Hr1G080480.1 , HORVU1Hr1G080480.6 , HORVU1Hr1G080480.5 , HORVU1Hr1G080480.4
Wheat TraesCS1D02G361400
Populus -


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cDNA sequences
Sobic.005G115600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G030800 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
2 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
3 Sobic.003G279800 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
4 Sobic.002G383900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
5 Sobic.003G157700 expressed protein -
6 Sobic.002G083600 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
7 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
8 Sobic.003G258800 glutamate synthase, chloroplast precursor, putative, expressed K00264: glutamate synthase (NADH)
9 Sobic.003G105000 kinase, pfkB family, putative, expressed -
10 Sobic.002G030800 app1, putative, expressed -
11 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
13 Sobic.003G128800 expansin precursor, putative, expressed -
14 Sobic.002G357400 transcription repressor HOTR, putative, expressed -
15 Sobic.001G243100 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
16 Sobic.005G219700 Leucine Rich Repeat family protein, expressed -
17 Sobic.010G187500 CRAL/TRIO domain containing protein, expressed -
18 Sobic.006G014000 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
19 Sobic.009G176800 DUF567 domain containing protein, putative, expressed -
20 Sobic.008G072600 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase


Gene co-expression network
sample Sobic005G115600 Sobic005G115600 Sobic006G030800 Sobic006G030800 Sobic005G115600--Sobic006G030800 Sobic009G017500 Sobic009G017500 Sobic005G115600--Sobic009G017500 Sobic003G279800 Sobic003G279800 Sobic005G115600--Sobic003G279800 Sobic002G383900 Sobic002G383900 Sobic005G115600--Sobic002G383900 Sobic003G157700 Sobic003G157700 Sobic005G115600--Sobic003G157700 Sobic002G083600 Sobic002G083600 Sobic005G115600--Sobic002G083600 Sobic006G256200 Sobic006G256200 Sobic005G115600--Sobic006G256200 Sobic003G258800 Sobic003G258800 Sobic005G115600--Sobic003G258800 Sobic003G105000 Sobic003G105000 Sobic005G115600--Sobic003G105000 Sobic006G030800--Sobic005G115600 Sobic010G213600 Sobic010G213600 Sobic006G030800--Sobic010G213600 Sobic005G100800 Sobic005G100800 Sobic006G030800--Sobic005G100800 Sobic009G058400 Sobic009G058400 Sobic006G030800--Sobic009G058400 Sobic003G020500 Sobic003G020500 Sobic006G030800--Sobic003G020500 Sobic004G008600 Sobic004G008600 Sobic006G030800--Sobic004G008600 Sobic005G134200 Sobic005G134200 Sobic006G030800--Sobic005G134200 Sobic001G218500 Sobic001G218500 Sobic006G030800--Sobic001G218500 Sobic009G060700 Sobic009G060700 Sobic006G030800--Sobic009G060700 Sobic001G208600 Sobic001G208600 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G221900 Sobic009G221900 Sobic009G017500--Sobic009G221900 Sobic002G030800 Sobic002G030800 Sobic009G017500--Sobic002G030800 Sobic008G072600 Sobic008G072600 Sobic009G017500--Sobic008G072600 Sobic010G096100 Sobic010G096100 Sobic009G017500--Sobic010G096100 Sobic006G075000 Sobic006G075000 Sobic009G017500--Sobic006G075000 Sobic003G099166 Sobic003G099166 Sobic009G017500--Sobic003G099166 Sobic003G238600 Sobic003G238600 Sobic009G017500--Sobic003G238600 Sobic001G228200 Sobic001G228200 Sobic003G279800--Sobic001G228200 Sobic003G279800--Sobic005G115600 Sobic004G215700 Sobic004G215700 Sobic003G279800--Sobic004G215700 Sobic006G135000 Sobic006G135000 Sobic003G279800--Sobic006G135000 Sobic008G129300 Sobic008G129300 Sobic003G279800--Sobic008G129300 Sobic003G279800--Sobic009G017500 Sobic007G143000 Sobic007G143000 Sobic003G279800--Sobic007G143000 Sobic003G445000 Sobic003G445000 Sobic003G279800--Sobic003G445000 Sobic003G279800--Sobic002G383900 Sobic004G161900 Sobic004G161900 Sobic002G383900--Sobic004G161900 Sobic002G383900--Sobic001G263900 Sobic007G020700 Sobic007G020700 Sobic002G383900--Sobic007G020700 Sobic005G022500 Sobic005G022500 Sobic002G383900--Sobic005G022500 Sobic005G219700 Sobic005G219700 Sobic002G383900--Sobic005G219700 Sobic007G106500 Sobic007G106500 Sobic002G383900--Sobic007G106500 Sobic001G365200 Sobic001G365200 Sobic002G383900--Sobic001G365200 Sobic002G207000 Sobic002G207000 Sobic002G383900--Sobic002G207000 Sobic001G314000 Sobic001G314000 Sobic002G383900--Sobic001G314000 Sobic002G415000 Sobic002G415000 Sobic003G157700--Sobic002G415000 Sobic001G261460 Sobic001G261460 Sobic003G157700--Sobic001G261460 Sobic005G061200 Sobic005G061200 Sobic003G157700--Sobic005G061200 Sobic003G206700 Sobic003G206700 Sobic003G157700--Sobic003G206700 Sobic007G047300 Sobic007G047300 Sobic003G157700--Sobic007G047300 Sobic010G047600 Sobic010G047600 Sobic003G157700--Sobic010G047600 Sobic009G008800 Sobic009G008800 Sobic003G157700--Sobic009G008800 Sobic001G059500 Sobic001G059500 Sobic003G157700--Sobic001G059500 Sobic001G360700 Sobic001G360700 Sobic003G157700--Sobic001G360700 Sobic003G371400 Sobic003G371400 Sobic002G083600--Sobic003G371400 Sobic005G112000 Sobic005G112000 Sobic002G083600--Sobic005G112000 Sobic002G083600--Sobic009G221900 Sobic001G402400 Sobic001G402400 Sobic002G083600--Sobic001G402400 Sobic007G064900 Sobic007G064900 Sobic002G083600--Sobic007G064900 Sobic002G083600--Sobic002G207000 Sobic010G234300 Sobic010G234300 Sobic002G083600--Sobic010G234300 Sobic005G012800 Sobic005G012800 Sobic002G083600--Sobic005G012800 Sobic002G083600--Sobic001G365200 Sobic006G256200--Sobic008G072600 Sobic006G256200--Sobic009G221900 Sobic008G091557 Sobic008G091557 Sobic006G256200--Sobic008G091557 Sobic006G256200--Sobic009G017500 Sobic006G249400 Sobic006G249400 Sobic006G256200--Sobic006G249400 Sobic006G256200--Sobic002G083600 Sobic006G256200--Sobic001G208600 Sobic005G071800 Sobic005G071800 Sobic006G256200--Sobic005G071800 Sobic006G256200--Sobic005G115600 Sobic003G258800--Sobic005G115600 Sobic003G258800--Sobic005G071800 Sobic003G258800--Sobic002G083600 Sobic010G055100 Sobic010G055100 Sobic003G258800--Sobic010G055100 Sobic003G258800--Sobic006G256200 Sobic003G258800--Sobic002G383900 Sobic003G258800--Sobic006G030800 Sobic005G110541 Sobic005G110541 Sobic003G258800--Sobic005G110541 Sobic003G258800--Sobic008G072600 Sobic003G105000--Sobic001G365200 Sobic004G193500 Sobic004G193500 Sobic003G105000--Sobic004G193500 Sobic005G127200 Sobic005G127200 Sobic003G105000--Sobic005G127200 Sobic003G428300 Sobic003G428300 Sobic003G105000--Sobic003G428300 Sobic010G093300 Sobic010G093300 Sobic003G105000--Sobic010G093300 Sobic003G105000--Sobic003G157700 Sobic003G255600 Sobic003G255600 Sobic003G105000--Sobic003G255600 Sobic010G187500 Sobic010G187500 Sobic003G105000--Sobic010G187500 Sobic002G030650 Sobic002G030650 Sobic003G105000--Sobic002G030650
Octagon: transcription factors


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