Gene annotation
Transcriptome id Sobic.004G345100.1
Synonym PKR1, Sb04g037215, CHR4
Functional annotation expressed protein
UniProt A0A194YSY4
Pfam -
Panther DB PTHR21717 PTHR21717:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44800 : chromatin remodeling 4
RAP-DB (Rice) LOC_Os02g57200.1 : expressed protein
MaizeGDB (Corn) Zm00025a022606
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G345100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G072400 DUF584 domain containing protein, putative, expressed -
2 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
3 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
5 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
6 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
7 Sobic.006G120800 transglutaminase, putative, expressed -
8 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
9 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
10 Sobic.001G033400 protein kinase domain containing protein, expressed -
11 Sobic.006G170700 START domain containing protein, putative, expressed -
12 Sobic.010G207400 protein kinase domain containing protein, expressed -
13 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
14 Sobic.004G318400 MTD1, putative, expressed -
15 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
16 Sobic.003G122300 mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
17 Sobic.010G110000 asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
18 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
19 Sobic.009G025100 transporter, putative, expressed -
20 Sobic.005G003750 - -


Gene co-expression network
sample Sobic004G345100 Sobic004G345100 Sobic006G072400 Sobic006G072400 Sobic004G345100--Sobic006G072400 Sobic004G028800 Sobic004G028800 Sobic004G345100--Sobic004G028800 Sobic003G004500 Sobic003G004500 Sobic004G345100--Sobic003G004500 Sobic006G261100 Sobic006G261100 Sobic004G345100--Sobic006G261100 Sobic002G359900 Sobic002G359900 Sobic004G345100--Sobic002G359900 Sobic002G252900 Sobic002G252900 Sobic004G345100--Sobic002G252900 Sobic006G120800 Sobic006G120800 Sobic004G345100--Sobic006G120800 Sobic001G458200 Sobic001G458200 Sobic004G345100--Sobic001G458200 Sobic003G415100 Sobic003G415100 Sobic004G345100--Sobic003G415100 Sobic006G072400--Sobic004G345100 Sobic001G196800 Sobic001G196800 Sobic006G072400--Sobic001G196800 Sobic003G304500 Sobic003G304500 Sobic006G072400--Sobic003G304500 Sobic004G318400 Sobic004G318400 Sobic006G072400--Sobic004G318400 Sobic006G072400--Sobic004G028800 Sobic004G250600 Sobic004G250600 Sobic006G072400--Sobic004G250600 Sobic004G155300 Sobic004G155300 Sobic006G072400--Sobic004G155300 Sobic001G154200 Sobic001G154200 Sobic006G072400--Sobic001G154200 Sobic005G032400 Sobic005G032400 Sobic006G072400--Sobic005G032400 Sobic006G244500 Sobic006G244500 Sobic004G028800--Sobic006G244500 Sobic001G488200 Sobic001G488200 Sobic004G028800--Sobic001G488200 Sobic006G151001 Sobic006G151001 Sobic004G028800--Sobic006G151001 Sobic004G028800--Sobic004G155300 Sobic003G062200 Sobic003G062200 Sobic004G028800--Sobic003G062200 Sobic004G028800--Sobic004G345100 Sobic009G009800 Sobic009G009800 Sobic004G028800--Sobic009G009800 Sobic004G028800--Sobic002G359900 Sobic006G066600 Sobic006G066600 Sobic004G028800--Sobic006G066600 Sobic010G250900 Sobic010G250900 Sobic003G004500--Sobic010G250900 Sobic005G050600 Sobic005G050600 Sobic003G004500--Sobic005G050600 Sobic008G064250 Sobic008G064250 Sobic003G004500--Sobic008G064250 Sobic003G425600 Sobic003G425600 Sobic003G004500--Sobic003G425600 Sobic005G083160 Sobic005G083160 Sobic003G004500--Sobic005G083160 Sobic003G004500--Sobic005G032400 Sobic010G107300 Sobic010G107300 Sobic003G004500--Sobic010G107300 Sobic001G233900 Sobic001G233900 Sobic003G004500--Sobic001G233900 Sobic007G018200 Sobic007G018200 Sobic003G004500--Sobic007G018200 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic010G253100 Sobic010G253100 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic002G359900--Sobic001G458200 Sobic002G403200 Sobic002G403200 Sobic002G359900--Sobic002G403200 Sobic002G359900--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic002G359900--Sobic002G204000 Sobic002G062500 Sobic002G062500 Sobic002G252900--Sobic002G062500 Sobic004G242000 Sobic004G242000 Sobic002G252900--Sobic004G242000 Sobic009G030400 Sobic009G030400 Sobic002G252900--Sobic009G030400 Sobic002G252900--Sobic004G345100 Sobic002G385300 Sobic002G385300 Sobic002G252900--Sobic002G385300 Sobic009G060400 Sobic009G060400 Sobic002G252900--Sobic009G060400 Sobic010G250100 Sobic010G250100 Sobic002G252900--Sobic010G250100 Sobic002G390400 Sobic002G390400 Sobic002G252900--Sobic002G390400 Sobic010G256200 Sobic010G256200 Sobic002G252900--Sobic010G256200 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic009G258400 Sobic009G258400 Sobic006G120800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic003G192000 Sobic003G192000 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic009G069200 Sobic009G069200 Sobic003G415100--Sobic009G069200 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400
Octagon: transcription factors


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