Gene annotation
Transcriptome id Sobic.004G208400.1
Synonym Sb04g025400, SbBBX6;B-box (BBX) protein, STO, B-box (BBX) protein, SbBBX6
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
B-box zinc finger family protein, putative, expressed
UniProt C5XX80
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G06040 : B-box zinc finger family protein
RAP-DB (Rice) LOC_Os02g39360.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020944 , Zm00025a010859 , Zm00025a031881 , Zm00025a056617 , Zm00025a010390 , Zm00025a021250
Brachypodium KQJ83834 , KQJ83320 , KQJ83321 , KQK00247 , KQK00540 , KQJ91873
Barley HORVU2Hr1G085000.3 , HORVU2Hr1G085000.2 , HORVU2Hr1G085000.1 , HORVU2Hr1G085000.4 , HORVU6Hr1G028150.2 , HORVU6Hr1G028150.7 , HORVU2Hr1G092460.9 , HORVU2Hr1G092460.8 , HORVU2Hr1G092460.4 , HORVU2Hr1G092460.3 , HORVU2Hr1G092460.2 , HORVU2Hr1G092460.5 , HORVU2Hr1G092460.7 , HORVU2Hr1G092460.20 , HORVU2Hr1G092460.19 , HORVU2Hr1G092460.18 , HORVU2Hr1G092460.11 , HORVU2Hr1G092460.10 , HORVU2Hr1G092460.13 , HORVU2Hr1G092460.12 , HORVU2Hr1G092460.15 , HORVU2Hr1G092460.14 , HORVU2Hr1G092460.17 , HORVU2Hr1G092460.16
Wheat TraesCS2B02G367300 , TraesCS2B02G367300 , TraesCS2A02G388500 , TraesCS2A02G388500 , TraesCS6D02G199200 , TraesCS2D02G386300 , TraesCS6B02G246500 , TraesCS6A02G143900 , TraesCS6B02G172300 , TraesCS2A02G366100 , TraesCS2A02G366100 , TraesCS2D02G347300 , TraesCS2D02G347300 , TraesCS2A02G348900 , TraesCS2D02G386300 , TraesCS6A02G216400 , TraesCS2B02G406600 , TraesCS2B02G406600
Populus -


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cDNA sequences
Sobic.004G208400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G173000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
2 Sobic.002G291700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G279300 photoperiodic flowering time gene(PubMedID : 22394582)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
4 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.006G137400 - -
6 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
7 Sobic.004G096200 - -
8 Sobic.007G037100 MYB family transcription factor, putative, expressed -
9 Sobic.001G515600 expressed protein -
10 Sobic.005G130450 - -
11 Sobic.005G117901 - -
12 Sobic.001G484800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
13 Sobic.010G124001 - -
14 Sobic.004G065650 - -
15 Sobic.004G188400 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
16 Sobic.001G532000 OsFBX76 - F-box domain containing protein, expressed -
17 Sobic.010G218500 bZIP transcription factor domain containing protein, expressed -
18 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
19 Sobic.004G112500 - -
20 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -


Gene co-expression network
sample Sobic004G208400 Sobic004G208400 Sobic006G173000 Sobic006G173000 Sobic004G208400--Sobic006G173000 Sobic002G291700 Sobic002G291700 Sobic004G208400--Sobic002G291700 Sobic004G279300 Sobic004G279300 Sobic004G208400--Sobic004G279300 Sobic007G211000 Sobic007G211000 Sobic004G208400--Sobic007G211000 Sobic006G137400 Sobic006G137400 Sobic004G208400--Sobic006G137400 Sobic003G121400 Sobic003G121400 Sobic004G208400--Sobic003G121400 Sobic004G096200 Sobic004G096200 Sobic004G208400--Sobic004G096200 Sobic007G037100 Sobic007G037100 Sobic004G208400--Sobic007G037100 Sobic001G515600 Sobic001G515600 Sobic004G208400--Sobic001G515600 Sobic006G173000--Sobic004G208400 Sobic006G173000--Sobic002G291700 Sobic001G484800 Sobic001G484800 Sobic006G173000--Sobic001G484800 Sobic004G065650 Sobic004G065650 Sobic006G173000--Sobic004G065650 Sobic006G173000--Sobic007G037100 Sobic005G110472 Sobic005G110472 Sobic006G173000--Sobic005G110472 Sobic004G188400 Sobic004G188400 Sobic006G173000--Sobic004G188400 Sobic006G225200 Sobic006G225200 Sobic006G173000--Sobic006G225200 Sobic001G532000 Sobic001G532000 Sobic006G173000--Sobic001G532000 Sobic002G291700--Sobic004G208400 Sobic002G291700--Sobic006G173000 Sobic002G291700--Sobic004G188400 Sobic002G291700--Sobic004G065650 Sobic002G203200 Sobic002G203200 Sobic002G291700--Sobic002G203200 Sobic002G291700--Sobic006G137400 Sobic001G118100 Sobic001G118100 Sobic002G291700--Sobic001G118100 Sobic002G291700--Sobic006G225200 Sobic002G291700--Sobic005G110472 Sobic004G279300--Sobic001G515600 Sobic004G279300--Sobic003G121400 Sobic005G117901 Sobic005G117901 Sobic004G279300--Sobic005G117901 Sobic005G130450 Sobic005G130450 Sobic004G279300--Sobic005G130450 Sobic004G279300--Sobic004G096200 Sobic003G117000 Sobic003G117000 Sobic004G279300--Sobic003G117000 Sobic001G243901 Sobic001G243901 Sobic004G279300--Sobic001G243901 Sobic004G279300--Sobic007G211000 Sobic004G279300--Sobic004G208400 Sobic001G024200 Sobic001G024200 Sobic007G211000--Sobic001G024200 Sobic004G112500 Sobic004G112500 Sobic007G211000--Sobic004G112500 Sobic010G124001 Sobic010G124001 Sobic007G211000--Sobic010G124001 Sobic007G211000--Sobic003G117000 Sobic001G272000 Sobic001G272000 Sobic007G211000--Sobic001G272000 Sobic007G211000--Sobic001G243901 Sobic007G211000--Sobic005G117901 Sobic004G212800 Sobic004G212800 Sobic007G211000--Sobic004G212800 Sobic010G248200 Sobic010G248200 Sobic007G211000--Sobic010G248200 Sobic006G137400--Sobic010G124001 Sobic006G137400--Sobic007G211000 Sobic006G137400--Sobic004G112500 Sobic006G137400--Sobic004G208400 Sobic008G041700 Sobic008G041700 Sobic006G137400--Sobic008G041700 Sobic006G137400--Sobic004G065650 Sobic006G137400--Sobic004G188400 Sobic003G201750 Sobic003G201750 Sobic006G137400--Sobic003G201750 Sobic006G137400--Sobic007G037100 Sobic003G121400--Sobic001G515600 Sobic003G121400--Sobic004G279300 Sobic003G121400--Sobic005G117901 Sobic003G121400--Sobic003G117000 Sobic003G121400--Sobic005G130450 Sobic003G121400--Sobic007G211000 Sobic003G121400--Sobic001G024200 Sobic001G222300 Sobic001G222300 Sobic003G121400--Sobic001G222300 Sobic003G121400--Sobic004G208400 Sobic004G096200--Sobic005G117901 Sobic008G101350 Sobic008G101350 Sobic004G096200--Sobic008G101350 Sobic004G096200--Sobic001G243901 Sobic004G096200--Sobic005G130450 Sobic004G096200--Sobic007G211000 Sobic010G218500 Sobic010G218500 Sobic004G096200--Sobic010G218500 Sobic002G048300 Sobic002G048300 Sobic004G096200--Sobic002G048300 Sobic006G082600 Sobic006G082600 Sobic007G037100--Sobic006G082600 Sobic007G037100--Sobic001G222300 Sobic008G116500 Sobic008G116500 Sobic007G037100--Sobic008G116500 Sobic002G001600 Sobic002G001600 Sobic007G037100--Sobic002G001600 Sobic007G037100--Sobic010G124001 Sobic007G037100--Sobic007G211000 Sobic007G078000 Sobic007G078000 Sobic007G037100--Sobic007G078000 Sobic001G162300 Sobic001G162300 Sobic007G037100--Sobic001G162300 Sobic002G283300 Sobic002G283300 Sobic007G037100--Sobic002G283300 Sobic001G515600--Sobic003G121400 Sobic001G515600--Sobic004G279300 Sobic001G515600--Sobic005G117901 Sobic001G515600--Sobic005G130450 Sobic001G515600--Sobic007G211000 Sobic001G515600--Sobic004G096200 Sobic001G515600--Sobic001G024200 Sobic001G515600--Sobic001G243901 Sobic001G515600--Sobic003G117000
Octagon: transcription factors


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