Gene annotation
Transcriptome id Sobic.002G291700.2
Synonym PMI1, Sb02g032300
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W6F5
Pfam PF10358
Panther DB PTHR33414 PTHR33414:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G42550 : plastid movement impaired1
RAP-DB (Rice) LOC_Os09g38090.1 : expressed protein
MaizeGDB (Corn) Zm00025a047943
Brachypodium KQJ91394
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G208400 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
2 Sobic.006G173000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
3 Sobic.004G188400 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
4 Sobic.004G065650 - -
5 Sobic.002G203200 - -
6 Sobic.006G137400 - -
7 Sobic.001G118100 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
8 Sobic.006G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cyclin, putative, expressed -
9 Sobic.005G110472 - -
10 Sobic.001G484800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
11 Sobic.008G013600 - -
12 Sobic.010G124001 - -
13 Sobic.009G140500 no apical meristem protein, putative, expressed -
14 Sobic.004G096200 - -
15 Sobic.001G372700 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
16 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.007G037100 MYB family transcription factor, putative, expressed -
18 Sobic.005G036600 calmodulin-binding protein, putative, expressed -
19 Sobic.001G067850 - -
20 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -


Gene co-expression network
sample Sobic002G291700 Sobic002G291700 Sobic004G208400 Sobic004G208400 Sobic002G291700--Sobic004G208400 Sobic006G173000 Sobic006G173000 Sobic002G291700--Sobic006G173000 Sobic004G188400 Sobic004G188400 Sobic002G291700--Sobic004G188400 Sobic004G065650 Sobic004G065650 Sobic002G291700--Sobic004G065650 Sobic002G203200 Sobic002G203200 Sobic002G291700--Sobic002G203200 Sobic006G137400 Sobic006G137400 Sobic002G291700--Sobic006G137400 Sobic001G118100 Sobic001G118100 Sobic002G291700--Sobic001G118100 Sobic006G225200 Sobic006G225200 Sobic002G291700--Sobic006G225200 Sobic005G110472 Sobic005G110472 Sobic002G291700--Sobic005G110472 Sobic004G208400--Sobic006G173000 Sobic004G208400--Sobic002G291700 Sobic004G279300 Sobic004G279300 Sobic004G208400--Sobic004G279300 Sobic007G211000 Sobic007G211000 Sobic004G208400--Sobic007G211000 Sobic004G208400--Sobic006G137400 Sobic003G121400 Sobic003G121400 Sobic004G208400--Sobic003G121400 Sobic004G096200 Sobic004G096200 Sobic004G208400--Sobic004G096200 Sobic007G037100 Sobic007G037100 Sobic004G208400--Sobic007G037100 Sobic001G515600 Sobic001G515600 Sobic004G208400--Sobic001G515600 Sobic006G173000--Sobic004G208400 Sobic006G173000--Sobic002G291700 Sobic001G484800 Sobic001G484800 Sobic006G173000--Sobic001G484800 Sobic006G173000--Sobic004G065650 Sobic006G173000--Sobic007G037100 Sobic006G173000--Sobic005G110472 Sobic006G173000--Sobic004G188400 Sobic006G173000--Sobic006G225200 Sobic001G532000 Sobic001G532000 Sobic006G173000--Sobic001G532000 Sobic001G372700 Sobic001G372700 Sobic004G188400--Sobic001G372700 Sobic004G188400--Sobic004G065650 Sobic009G127900 Sobic009G127900 Sobic004G188400--Sobic009G127900 Sobic003G268300 Sobic003G268300 Sobic004G188400--Sobic003G268300 Sobic006G082600 Sobic006G082600 Sobic004G188400--Sobic006G082600 Sobic004G188400--Sobic005G110472 Sobic004G196700 Sobic004G196700 Sobic004G188400--Sobic004G196700 Sobic007G037900 Sobic007G037900 Sobic004G188400--Sobic007G037900 Sobic002G165300 Sobic002G165300 Sobic004G188400--Sobic002G165300 Sobic004G065650--Sobic004G188400 Sobic004G065650--Sobic005G110472 Sobic004G065650--Sobic007G037900 Sobic006G088580 Sobic006G088580 Sobic004G065650--Sobic006G088580 Sobic009G140500 Sobic009G140500 Sobic004G065650--Sobic009G140500 Sobic008G013600 Sobic008G013600 Sobic004G065650--Sobic008G013600 Sobic010G124001 Sobic010G124001 Sobic004G065650--Sobic010G124001 Sobic004G065650--Sobic006G137400 Sobic001G067850 Sobic001G067850 Sobic004G065650--Sobic001G067850 Sobic002G203200--Sobic010G124001 Sobic002G203200--Sobic007G037900 Sobic002G203200--Sobic001G067850 Sobic002G203200--Sobic006G082600 Sobic002G203200--Sobic009G140500 Sobic005G130200 Sobic005G130200 Sobic002G203200--Sobic005G130200 Sobic002G203200--Sobic002G165300 Sobic002G203200--Sobic007G211000 Sobic002G203200--Sobic004G196700 Sobic006G137400--Sobic010G124001 Sobic006G137400--Sobic007G211000 Sobic004G112500 Sobic004G112500 Sobic006G137400--Sobic004G112500 Sobic006G137400--Sobic004G208400 Sobic008G041700 Sobic008G041700 Sobic006G137400--Sobic008G041700 Sobic006G137400--Sobic004G065650 Sobic006G137400--Sobic004G188400 Sobic003G201750 Sobic003G201750 Sobic006G137400--Sobic003G201750 Sobic006G137400--Sobic007G037100 Sobic004G001300 Sobic004G001300 Sobic001G118100--Sobic004G001300 Sobic001G118100--Sobic006G225200 Sobic005G036600 Sobic005G036600 Sobic001G118100--Sobic005G036600 Sobic001G118100--Sobic009G140500 Sobic004G113800 Sobic004G113800 Sobic001G118100--Sobic004G113800 Sobic001G118100--Sobic001G484800 Sobic001G118100--Sobic002G291700 Sobic007G052900 Sobic007G052900 Sobic001G118100--Sobic007G052900 Sobic001G118100--Sobic004G065650 Sobic006G225200--Sobic001G118100 Sobic003G009700 Sobic003G009700 Sobic006G225200--Sobic003G009700 Sobic006G225200--Sobic001G484800 Sobic006G225200--Sobic006G173000 Sobic002G385700 Sobic002G385700 Sobic006G225200--Sobic002G385700 Sobic006G225200--Sobic002G291700 Sobic003G004200 Sobic003G004200 Sobic006G225200--Sobic003G004200 Sobic001G233400 Sobic001G233400 Sobic006G225200--Sobic001G233400 Sobic007G173200 Sobic007G173200 Sobic006G225200--Sobic007G173200 Sobic003G170100 Sobic003G170100 Sobic005G110472--Sobic003G170100 Sobic007G096600 Sobic007G096600 Sobic005G110472--Sobic007G096600 Sobic005G110472--Sobic003G268300 Sobic003G390400 Sobic003G390400 Sobic005G110472--Sobic003G390400 Sobic002G243900 Sobic002G243900 Sobic005G110472--Sobic002G243900 Sobic003G200200 Sobic003G200200 Sobic005G110472--Sobic003G200200 Sobic007G113800 Sobic007G113800 Sobic005G110472--Sobic007G113800 Sobic007G137900 Sobic007G137900 Sobic005G110472--Sobic007G137900 Sobic003G176500 Sobic003G176500 Sobic005G110472--Sobic003G176500
Octagon: transcription factors


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