Gene annotation
Transcriptome id Sobic.004G040900.1
Synonym Sb04g003550
Functional annotation CPuORF14 - conserved peptide uORF-containing transcript, expressed
UniProt C5XUN8
Pfam PF02020 PF01873
Panther DB PTHR23001 PTHR23001:SF8
NCBI CDD KOG2767; Translation initiation factor 5 (eIF-5)
KEGG Orthology K03262; translation initiation factor 5
Gene Ontology GO:0005515; protein binding GO:0006413translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT1G36730 : Translation initiation factor IF2/IF5
RAP-DB (Rice) LOC_Os06g48350.1 : CPuORF14 - conserved peptide uORF-containing transcript, expressed
MaizeGDB (Corn) Zm00025a034888 , Zm00025a017616
Brachypodium KQJ93319 , PNT65835
Barley HORVU6Hr1G021630.2 , HORVU6Hr1G021630.3 , HORVU6Hr1G021630.1 , HORVU6Hr1G021630.4 , HORVU6Hr1G021630.5 , HORVU6Hr1G072500.1 , HORVU6Hr1G072500.2 , HORVU6Hr1G020300.1
Wheat -
Populus PNT40688


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cDNA sequences
Sobic.004G040900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
3 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
4 Sobic.001G402500 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
5 Sobic.008G070800 expressed protein -
6 Sobic.001G120500 toc64, putative, expressed -
7 Sobic.008G183700 cbbY protein-related, putative, expressed -
8 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
9 Sobic.003G355900 prenylated rab acceptor, putative, expressed -
10 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
11 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
12 Sobic.010G262000 tRNA-dihydrouridine synthase, putative, expressed K05542: tRNA-dihydrouridine synthase 1
13 Sobic.003G043300 early fruit mRNA, putative, expressed -
14 Sobic.001G048100 OsAPRL5 adenosine 5\'-phosphosulfate reductase-like OsAPRL5, expressed -
15 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
16 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
18 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
19 Sobic.008G081300 protein kinase, putative, expressed -
20 Sobic.002G343400 tic20, putative, expressed -


Gene co-expression network
sample Sobic004G040900 Sobic004G040900 Sobic002G359400 Sobic002G359400 Sobic004G040900--Sobic002G359400 Sobic002G294800 Sobic002G294800 Sobic004G040900--Sobic002G294800 Sobic010G013200 Sobic010G013200 Sobic004G040900--Sobic010G013200 Sobic001G402500 Sobic001G402500 Sobic004G040900--Sobic001G402500 Sobic008G070800 Sobic008G070800 Sobic004G040900--Sobic008G070800 Sobic001G120500 Sobic001G120500 Sobic004G040900--Sobic001G120500 Sobic008G183700 Sobic008G183700 Sobic004G040900--Sobic008G183700 Sobic004G296400 Sobic004G296400 Sobic004G040900--Sobic004G296400 Sobic003G355900 Sobic003G355900 Sobic004G040900--Sobic003G355900 Sobic001G007000 Sobic001G007000 Sobic002G359400--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic008G004600 Sobic008G004600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic002G294800--Sobic010G013200 Sobic001G268200 Sobic001G268200 Sobic010G013200--Sobic001G268200 Sobic008G081300 Sobic008G081300 Sobic010G013200--Sobic008G081300 Sobic002G311100 Sobic002G311100 Sobic010G013200--Sobic002G311100 Sobic001G049500 Sobic001G049500 Sobic010G013200--Sobic001G049500 Sobic010G013200--Sobic002G294800 Sobic006G086500 Sobic006G086500 Sobic010G013200--Sobic006G086500 Sobic009G201300 Sobic009G201300 Sobic010G013200--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic010G013200--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic010G013200--Sobic010G147100 Sobic001G402500--Sobic004G040900 Sobic001G402500--Sobic001G120500 Sobic010G265300 Sobic010G265300 Sobic001G402500--Sobic010G265300 Sobic005G142800 Sobic005G142800 Sobic001G402500--Sobic005G142800 Sobic006G119400 Sobic006G119400 Sobic001G402500--Sobic006G119400 Sobic005G026000 Sobic005G026000 Sobic001G402500--Sobic005G026000 Sobic005G231100 Sobic005G231100 Sobic001G402500--Sobic005G231100 Sobic001G124100 Sobic001G124100 Sobic001G402500--Sobic001G124100 Sobic009G162600 Sobic009G162600 Sobic001G402500--Sobic009G162600 Sobic001G080700 Sobic001G080700 Sobic008G070800--Sobic001G080700 Sobic008G070800--Sobic001G392300 Sobic006G185100 Sobic006G185100 Sobic008G070800--Sobic006G185100 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic002G047700 Sobic002G047700 Sobic008G070800--Sobic002G047700 Sobic008G070800--Sobic002G294800 Sobic001G333100 Sobic001G333100 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800 Sobic001G120500--Sobic010G265300 Sobic005G172500 Sobic005G172500 Sobic001G120500--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic001G120500--Sobic001G244300 Sobic001G493200 Sobic001G493200 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic008G051200 Sobic008G051200 Sobic001G120500--Sobic008G051200 Sobic009G056200 Sobic009G056200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500 Sobic008G183700--Sobic004G040900 Sobic009G124000 Sobic009G124000 Sobic008G183700--Sobic009G124000 Sobic003G083400 Sobic003G083400 Sobic008G183700--Sobic003G083400 Sobic008G067100 Sobic008G067100 Sobic008G183700--Sobic008G067100 Sobic008G183700--Sobic001G402500 Sobic008G183700--Sobic005G231100 Sobic001G401700 Sobic001G401700 Sobic008G183700--Sobic001G401700 Sobic004G055500 Sobic004G055500 Sobic008G183700--Sobic004G055500 Sobic003G128400 Sobic003G128400 Sobic008G183700--Sobic003G128400 Sobic003G233600 Sobic003G233600 Sobic004G296400--Sobic003G233600 Sobic003G169600 Sobic003G169600 Sobic004G296400--Sobic003G169600 Sobic010G138000 Sobic010G138000 Sobic004G296400--Sobic010G138000 Sobic001G085300 Sobic001G085300 Sobic004G296400--Sobic001G085300 Sobic002G116900 Sobic002G116900 Sobic004G296400--Sobic002G116900 Sobic002G166300 Sobic002G166300 Sobic004G296400--Sobic002G166300 Sobic001G390800 Sobic001G390800 Sobic004G296400--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic004G296400--Sobic001G124200 Sobic004G296400--Sobic004G040900 Sobic003G355900--Sobic002G294800 Sobic003G355900--Sobic002G359400 Sobic001G128300 Sobic001G128300 Sobic003G355900--Sobic001G128300 Sobic001G451400 Sobic001G451400 Sobic003G355900--Sobic001G451400 Sobic003G355900--Sobic001G389100 Sobic009G068500 Sobic009G068500 Sobic003G355900--Sobic009G068500 Sobic003G369400 Sobic003G369400 Sobic003G355900--Sobic003G369400 Sobic005G084800 Sobic005G084800 Sobic003G355900--Sobic005G084800 Sobic009G132700 Sobic009G132700 Sobic003G355900--Sobic009G132700
Octagon: transcription factors


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