Gene annotation
Transcriptome id Sobic.004G029400.1
Synonym Sb04g002580
Functional annotation periplasmic beta-glucosidase precursor, putative, expressed
UniProt A0A1Z5RKV2
Pfam PF01915 PF00933
Panther DB PTHR30620 PTHR30620:SF23
NCBI CDD -
KEGG Orthology K05349; beta-glucosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G04885 : Glycosyl hydrolase family protein
RAP-DB (Rice) LOC_Os02g03870.1 : periplasmic beta-glucosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a034995
Brachypodium KQK13208
Barley HORVU3Hr1G034870.7 , HORVU3Hr1G034870.6 , HORVU3Hr1G034870.5 , HORVU3Hr1G034870.3 , HORVU3Hr1G034870.2 , HORVU3Hr1G034870.1
Wheat TraesCS3B02G203300 , TraesCS3B02G203300 , TraesCS3D02G179000 , TraesCS3A02G172500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
2 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.010G031700 thaumatin, putative, expressed -
4 Sobic.004G121600 expansin precursor, putative, expressed -
5 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
6 Sobic.001G539200 expressed protein -
7 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
8 Sobic.003G282300 POEI51 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
9 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
10 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
11 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G319400 receptor protein kinase, putative, expressed -
13 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
14 Sobic.003G095100 glycosyltransferase protein, putative, expressed -
15 Sobic.008G020000 - -
16 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
17 Sobic.002G118801 - -
18 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
19 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
20 Sobic.005G097400 cell death associated protein, putative, expressed -


Gene co-expression network
sample Sobic004G029400 Sobic004G029400 Sobic003G441800 Sobic003G441800 Sobic004G029400--Sobic003G441800 Sobic003G053200 Sobic003G053200 Sobic004G029400--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic004G029400--Sobic010G031700 Sobic004G121600 Sobic004G121600 Sobic004G029400--Sobic004G121600 Sobic007G037600 Sobic007G037600 Sobic004G029400--Sobic007G037600 Sobic001G539200 Sobic001G539200 Sobic004G029400--Sobic001G539200 Sobic009G181600 Sobic009G181600 Sobic004G029400--Sobic009G181600 Sobic003G282300 Sobic003G282300 Sobic004G029400--Sobic003G282300 Sobic005G119900 Sobic005G119900 Sobic004G029400--Sobic005G119900 Sobic003G441800--Sobic003G053200 Sobic003G441700 Sobic003G441700 Sobic003G441800--Sobic003G441700 Sobic003G441601 Sobic003G441601 Sobic003G441800--Sobic003G441601 Sobic005G046400 Sobic005G046400 Sobic003G441800--Sobic005G046400 Sobic006G205700 Sobic006G205700 Sobic003G441800--Sobic006G205700 Sobic003G441800--Sobic004G121600 Sobic003G441800--Sobic005G119900 Sobic003G441800--Sobic007G037600 Sobic009G065700 Sobic009G065700 Sobic003G441800--Sobic009G065700 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic001G301000 Sobic001G301000 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic003G053200--Sobic004G029400 Sobic001G231800 Sobic001G231800 Sobic003G053200--Sobic001G231800 Sobic003G053200--Sobic007G037600 Sobic010G031700--Sobic003G053200 Sobic010G031700--Sobic007G037600 Sobic010G031700--Sobic003G441800 Sobic004G106100 Sobic004G106100 Sobic010G031700--Sobic004G106100 Sobic010G031700--Sobic004G029400 Sobic006G003100 Sobic006G003100 Sobic010G031700--Sobic006G003100 Sobic010G031700--Sobic006G205700 Sobic002G233200 Sobic002G233200 Sobic010G031700--Sobic002G233200 Sobic003G353200 Sobic003G353200 Sobic010G031700--Sobic003G353200 Sobic004G121600--Sobic003G441700 Sobic004G121600--Sobic001G301000 Sobic006G097900 Sobic006G097900 Sobic004G121600--Sobic006G097900 Sobic004G121600--Sobic005G119900 Sobic004G121600--Sobic003G053200 Sobic004G121600--Sobic003G441800 Sobic008G010500 Sobic008G010500 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121800 Sobic004G121800 Sobic004G121600--Sobic004G121800 Sobic007G037600--Sobic003G441800 Sobic007G037600--Sobic003G353200 Sobic007G037600--Sobic010G031700 Sobic002G146000 Sobic002G146000 Sobic007G037600--Sobic002G146000 Sobic007G037600--Sobic003G053200 Sobic007G037600--Sobic004G029400 Sobic001G181600 Sobic001G181600 Sobic007G037600--Sobic001G181600 Sobic007G037600--Sobic001G301000 Sobic007G037600--Sobic006G205700 Sobic002G118801 Sobic002G118801 Sobic001G539200--Sobic002G118801 Sobic001G539200--Sobic005G119900 Sobic010G087900 Sobic010G087900 Sobic001G539200--Sobic010G087900 Sobic005G097400 Sobic005G097400 Sobic001G539200--Sobic005G097400 Sobic001G539200--Sobic003G053200 Sobic001G539200--Sobic004G029400 Sobic001G539200--Sobic003G441800 Sobic008G109400 Sobic008G109400 Sobic001G539200--Sobic008G109400 Sobic001G539200--Sobic003G441700 Sobic006G106900 Sobic006G106900 Sobic009G181600--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic009G181600--Sobic003G319400 Sobic005G202300 Sobic005G202300 Sobic009G181600--Sobic005G202300 Sobic006G092700 Sobic006G092700 Sobic009G181600--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic009G181600--Sobic008G164450 Sobic002G343100 Sobic002G343100 Sobic009G181600--Sobic002G343100 Sobic009G181600--Sobic004G029400 Sobic009G181600--Sobic007G037600 Sobic009G181600--Sobic010G031700 Sobic007G090600 Sobic007G090600 Sobic003G282300--Sobic007G090600 Sobic006G085700 Sobic006G085700 Sobic003G282300--Sobic006G085700 Sobic003G140200 Sobic003G140200 Sobic003G282300--Sobic003G140200 Sobic003G282300--Sobic004G106100 Sobic008G035800 Sobic008G035800 Sobic003G282300--Sobic008G035800 Sobic003G282300--Sobic006G205700 Sobic006G031100 Sobic006G031100 Sobic003G282300--Sobic006G031100 Sobic003G095100 Sobic003G095100 Sobic003G282300--Sobic003G095100 Sobic004G322000 Sobic004G322000 Sobic003G282300--Sobic004G322000 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic009G055300 Sobic009G055300 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800
Octagon: transcription factors


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