Gene annotation
Transcriptome id Sobic.004G003000.2
Synonym PGY2, Sb04g000460
Functional annotation ribosomal protein L6, putative, expressed
UniProt A0A1Z5RK78
Pfam PF00347
Panther DB PTHR11655 PTHR11655:SF18
NCBI CDD KOG3255; 60S ribosomal protein L9
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G33140 : Ribosomal protein L6 family
RAP-DB (Rice) LOC_Os09g31180.1 : ribosomal protein L6, putative, expressed
MaizeGDB (Corn) Zm00025a035088 , Zm00025a041170 , Zm00025a050305
Brachypodium KQK20034 , KQK15313 , KQJ92779
Barley HORVU7Hr1G002060.1 , HORVU7Hr1G002060.2 , HORVU3Hr1G001140.3 , HORVU7Hr1G043940.1 , HORVU0Hr1G006020.2 , HORVU3Hr1G001140.2 , HORVU3Hr1G001140.1 , HORVU3Hr1G001140.5 , HORVU3Hr1G001140.4
Wheat TraesCS3D02G003200 , TraesCS3B02G007200 , TraesCS7D02G016500 , TraesCS3B02G011300 , TraesCS7D02G016500 , TraesCS3B02G006500 , TraesCS3A02G007300 , TraesCS4A02G472200 , TraesCS7A02G020200 , TraesCS3D02G003800 , TraesCS7A02G020200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G342000 bet v I allergen family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
2 Sobic.002G016250 - -
3 Sobic.003G389400 patatin, putative, expressed -
4 Sobic.005G192901 "alpha-kafirin locus, highly digestible high-lysine (hdhl) mutant P721Q"(PubMedID : 23948869) -
5 Sobic.001G381250 - -
6 Sobic.001G381250 - -
7 Sobic.001G381250 - -
8 Sobic.001G381250 - -
9 Sobic.001G381250 - -
10 Sobic.001G381250 - -
11 Sobic.001G381250 - -
12 Sobic.001G381250 - -
13 Sobic.001G381250 - -
14 Sobic.001G381250 - -
15 Sobic.001G381250 - -
16 Sobic.001G381250 - -
17 Sobic.001G381250 - -
18 Sobic.001G381250 - -
19 Sobic.001G381250 - -
20 Sobic.001G381250 - -


Gene co-expression network
sample Sobic004G003000 Sobic004G003000 Sobic003G342000 Sobic003G342000 Sobic004G003000--Sobic003G342000 Sobic002G016250 Sobic002G016250 Sobic004G003000--Sobic002G016250 Sobic003G389400 Sobic003G389400 Sobic004G003000--Sobic003G389400 Sobic005G192901 Sobic005G192901 Sobic004G003000--Sobic005G192901 Sobic001G381250 Sobic001G381250 Sobic004G003000--Sobic001G381250 Sobic003G342000--Sobic002G016250 Sobic003G342000--Sobic003G389400 Sobic009G231500 Sobic009G231500 Sobic003G342000--Sobic009G231500 Sobic008G064250 Sobic008G064250 Sobic003G342000--Sobic008G064250 Sobic002G274900 Sobic002G274900 Sobic003G342000--Sobic002G274900 Sobic001G203100 Sobic001G203100 Sobic003G342000--Sobic001G203100 Sobic007G036600 Sobic007G036600 Sobic003G342000--Sobic007G036600 Sobic003G226000 Sobic003G226000 Sobic003G342000--Sobic003G226000 Sobic006G154300 Sobic006G154300 Sobic003G342000--Sobic006G154300 Sobic005G165632 Sobic005G165632 Sobic002G016250--Sobic005G165632 Sobic002G016250--Sobic008G064250 Sobic002G016250--Sobic003G342000 Sobic008G113350 Sobic008G113350 Sobic002G016250--Sobic008G113350 Sobic009G218100 Sobic009G218100 Sobic002G016250--Sobic009G218100 Sobic004G037300 Sobic004G037300 Sobic002G016250--Sobic004G037300 Sobic002G016250--Sobic003G389400 Sobic005G083160 Sobic005G083160 Sobic002G016250--Sobic005G083160 Sobic003G027700 Sobic003G027700 Sobic002G016250--Sobic003G027700 Sobic005G193100 Sobic005G193100 Sobic003G389400--Sobic005G193100 Sobic005G192801 Sobic005G192801 Sobic003G389400--Sobic005G192801 Sobic003G389400--Sobic001G381250 Sobic005G192901--Sobic005G192801 Sobic005G192700 Sobic005G192700 Sobic005G192901--Sobic005G192700 Sobic005G192900 Sobic005G192900 Sobic005G192901--Sobic005G192900 Sobic005G192901--Sobic005G193100 Sobic005G185600 Sobic005G185600 Sobic005G192901--Sobic005G185600 Sobic005G192901--Sobic001G381250 Sobic001G381250--Sobic001G381250
Octagon: transcription factors


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