Gene annotation
Transcriptome id Sobic.003G203600.2,Sobic.003G203600.1,Sobic.003G203600.3
Synonym REF1, ALDH1A, ALDH2C4, Sb03g026570
Functional annotation aldehyde dehydrogenase, putative, expressed
UniProt C5XPJ0 , A0A1W0VY97 , A0A1W0VY95
Pfam PF00171
Panther DB PTHR11699 PTHR11699:SF178
NCBI CDD -
KEGG Orthology K12355; coniferyl-aldehyde dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G24503 : aldehyde dehydrogenase 2C4
RAP-DB (Rice) LOC_Os01g40870.1 : aldehyde dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a038433 , Zm00025a042275 , Zm00025a032635 , Zm00025a028546 , Zm00025a028547
Brachypodium KQK08538 , KQK08540 , KQK08537 , PNT72304 , PNT72303
Barley HORVU1Hr1G068020.3 , HORVU1Hr1G068020.2 , HORVU1Hr1G068020.1 , HORVU1Hr1G068020.7 , HORVU1Hr1G068020.6 , HORVU1Hr1G068020.5 , HORVU1Hr1G068020.4 , HORVU3Hr1G092680.8 , HORVU3Hr1G092680.9 , HORVU3Hr1G092680.4 , HORVU3Hr1G092680.5 , HORVU3Hr1G092680.7 , HORVU3Hr1G092680.1 , HORVU3Hr1G092680.2 , HORVU3Hr1G092680.3 , HORVU6Hr1G072830.1 , HORVU6Hr1G072830.3 , HORVU0Hr1G031700.1 , HORVU0Hr1G031700.3 , HORVU0Hr1G031700.2 , HORVU0Hr1G031700.5 , HORVU0Hr1G031700.4 , HORVU0Hr1G028680.2 , HORVU0Hr1G028680.3 , HORVU6Hr1G072830.2 , HORVU0Hr1G028680.1 , HORVU0Hr1G028680.6 , HORVU0Hr1G028680.7 , HORVU0Hr1G028680.4 , HORVU0Hr1G028680.5 , HORVU3Hr1G092680.10 , HORVU3Hr1G092680.11
Wheat TraesCS6B02G321400 , TraesCS3A02G212300 , TraesCS1A02G310600 , TraesCS1D02G310100 , TraesCS3A02G417200 , TraesCS3A02G417200 , TraesCS3D02G412700 , TraesCS3D02G412700 , TraesCS1B02G321900 , TraesCS1B02G321900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G067100 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
2 Sobic.002G195600 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
3 Sobic.006G135300 expressed protein -
4 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
5 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
7 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
8 Sobic.007G170300 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
9 Sobic.004G038700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR5 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
10 Sobic.007G073000 - -
11 Sobic.008G011700 anthocyanin 5-O-glucosyltransferase, putative, expressed -
12 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
13 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
14 Sobic.002G404100 annexin, putative, expressed -
15 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
16 Sobic.001G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@secretory protein, putative, expressed -
17 Sobic.005G115300 expressed protein -
18 Sobic.003G240400 leaf senescence related protein, putative, expressed -
19 Sobic.006G019700 transferase family protein, putative, expressed -
20 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -


Gene co-expression network
sample Sobic003G203600 Sobic003G203600 Sobic001G067100 Sobic001G067100 Sobic003G203600--Sobic001G067100 Sobic002G195600 Sobic002G195600 Sobic003G203600--Sobic002G195600 Sobic006G135300 Sobic006G135300 Sobic003G203600--Sobic006G135300 Sobic010G082000 Sobic010G082000 Sobic003G203600--Sobic010G082000 Sobic003G426500 Sobic003G426500 Sobic003G203600--Sobic003G426500 Sobic006G028400 Sobic006G028400 Sobic003G203600--Sobic006G028400 Sobic006G092700 Sobic006G092700 Sobic003G203600--Sobic006G092700 Sobic007G170300 Sobic007G170300 Sobic003G203600--Sobic007G170300 Sobic004G038700 Sobic004G038700 Sobic003G203600--Sobic004G038700 Sobic008G011700 Sobic008G011700 Sobic001G067100--Sobic008G011700 Sobic001G067100--Sobic003G426500 Sobic001G067100--Sobic003G203600 Sobic007G100700 Sobic007G100700 Sobic001G067100--Sobic007G100700 Sobic003G182200 Sobic003G182200 Sobic001G067100--Sobic003G182200 Sobic002G185800 Sobic002G185800 Sobic001G067100--Sobic002G185800 Sobic010G066800 Sobic010G066800 Sobic001G067100--Sobic010G066800 Sobic003G228600 Sobic003G228600 Sobic001G067100--Sobic003G228600 Sobic007G165400 Sobic007G165400 Sobic001G067100--Sobic007G165400 Sobic007G073000 Sobic007G073000 Sobic002G195600--Sobic007G073000 Sobic006G196400 Sobic006G196400 Sobic002G195600--Sobic006G196400 Sobic008G138900 Sobic008G138900 Sobic002G195600--Sobic008G138900 Sobic003G215300 Sobic003G215300 Sobic002G195600--Sobic003G215300 Sobic003G240400 Sobic003G240400 Sobic002G195600--Sobic003G240400 Sobic004G014600 Sobic004G014600 Sobic002G195600--Sobic004G014600 Sobic007G090600 Sobic007G090600 Sobic002G195600--Sobic007G090600 Sobic002G195600--Sobic006G092700 Sobic002G195600--Sobic006G135300 Sobic006G135300--Sobic006G092700 Sobic006G135300--Sobic010G082000 Sobic006G135300--Sobic007G073000 Sobic010G028100 Sobic010G028100 Sobic006G135300--Sobic010G028100 Sobic006G019700 Sobic006G019700 Sobic006G135300--Sobic006G019700 Sobic010G152400 Sobic010G152400 Sobic006G135300--Sobic010G152400 Sobic003G322100 Sobic003G322100 Sobic006G135300--Sobic003G322100 Sobic004G306900 Sobic004G306900 Sobic006G135300--Sobic004G306900 Sobic002G146000 Sobic002G146000 Sobic006G135300--Sobic002G146000 Sobic010G082000--Sobic006G092700 Sobic010G082000--Sobic003G240400 Sobic010G082000--Sobic006G135300 Sobic010G082000--Sobic010G152400 Sobic006G028500 Sobic006G028500 Sobic010G082000--Sobic006G028500 Sobic010G082000--Sobic003G215300 Sobic010G082000--Sobic006G019700 Sobic010G082000--Sobic007G073000 Sobic010G082000--Sobic006G196400 Sobic003G426500--Sobic007G100700 Sobic003G426500--Sobic003G182200 Sobic003G426500--Sobic008G011700 Sobic003G426500--Sobic010G066800 Sobic003G426500--Sobic001G067100 Sobic002G068000 Sobic002G068000 Sobic003G426500--Sobic002G068000 Sobic009G259800 Sobic009G259800 Sobic003G426500--Sobic009G259800 Sobic010G158400 Sobic010G158400 Sobic003G426500--Sobic010G158400 Sobic003G349400 Sobic003G349400 Sobic003G426500--Sobic003G349400 Sobic006G183900 Sobic006G183900 Sobic006G028400--Sobic006G183900 Sobic006G028400--Sobic003G203600 Sobic006G028400--Sobic007G170300 Sobic007G109600 Sobic007G109600 Sobic006G028400--Sobic007G109600 Sobic007G178900 Sobic007G178900 Sobic006G028400--Sobic007G178900 Sobic006G028400--Sobic002G185800 Sobic002G365500 Sobic002G365500 Sobic006G028400--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic006G028400--Sobic004G071000 Sobic002G365550 Sobic002G365550 Sobic006G028400--Sobic002G365550 Sobic006G092700--Sobic006G135300 Sobic006G092700--Sobic010G082000 Sobic006G092700--Sobic010G028100 Sobic003G000100 Sobic003G000100 Sobic006G092700--Sobic003G000100 Sobic006G092700--Sobic007G073000 Sobic006G092700--Sobic010G152400 Sobic006G092700--Sobic002G146000 Sobic006G092700--Sobic004G306900 Sobic006G092700--Sobic006G019700 Sobic007G015200 Sobic007G015200 Sobic007G170300--Sobic007G015200 Sobic002G101400 Sobic002G101400 Sobic007G170300--Sobic002G101400 Sobic005G046700 Sobic005G046700 Sobic007G170300--Sobic005G046700 Sobic007G170300--Sobic003G203600 Sobic007G170300--Sobic006G028400 Sobic007G170300--Sobic006G183900 Sobic007G170300--Sobic007G073000 Sobic007G170300--Sobic002G185800 Sobic003G287200 Sobic003G287200 Sobic007G170300--Sobic003G287200 Sobic003G140600 Sobic003G140600 Sobic004G038700--Sobic003G140600 Sobic005G010100 Sobic005G010100 Sobic004G038700--Sobic005G010100 Sobic004G038700--Sobic003G228600 Sobic004G038700--Sobic003G203600 Sobic001G238000 Sobic001G238000 Sobic004G038700--Sobic001G238000 Sobic001G238200 Sobic001G238200 Sobic004G038700--Sobic001G238200 Sobic005G080400 Sobic005G080400 Sobic004G038700--Sobic005G080400 Sobic004G110700 Sobic004G110700 Sobic004G038700--Sobic004G110700 Sobic010G234500 Sobic010G234500 Sobic004G038700--Sobic010G234500
Octagon: transcription factors


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