Gene annotation
Transcriptome id Sobic.003G167900.3,Sobic.003G167900.2,Sobic.003G167900.1
Synonym Sb03g017150
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt A0A1B6Q3P6 , A0A1B6Q3Q5 , A0A1W0VXK7
Pfam -
Panther DB PTHR24014 PTHR24014:SF4
NCBI CDD KOG1971; Lysyl hydroxylase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18210 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g31770.1 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a024697
Brachypodium KQK04481 , KQK04480
Barley HORVU3Hr1G045410.8 , HORVU3Hr1G045410.5 , HORVU3Hr1G045410.4 , HORVU3Hr1G045410.7 , HORVU3Hr1G045410.6 , HORVU3Hr1G045410.1 , HORVU3Hr1G045410.3 , HORVU3Hr1G045410.2
Wheat TraesCS3A02G194300 , TraesCS3A02G194300 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3B02G230600 , TraesCS3D02G205500 , TraesCS3D02G205500 , TraesCS3D02G205500 , TraesCS3D02G205500 , TraesCS3D02G205500 , TraesCS3D02G205500 , TraesCS3D02G205500
Populus -


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cDNA sequences
Sobic.003G167900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
2 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
3 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
4 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
5 Sobic.001G250700 expressed protein -
6 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
7 Sobic.008G000400 GHMP kinases ATP-binding protein, putative, expressed K16190: glucuronokinase
8 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
9 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
10 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
11 Sobic.001G283600 NTMC2Type1.2 protein, putative, expressed -
12 Sobic.008G004300 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
13 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
14 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
15 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
16 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
17 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
18 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
19 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
20 Sobic.003G138900 aminotransferase, putative, expressed -


Gene co-expression network
sample Sobic003G167900 Sobic003G167900 Sobic006G073200 Sobic006G073200 Sobic003G167900--Sobic006G073200 Sobic002G083900 Sobic002G083900 Sobic003G167900--Sobic002G083900 Sobic008G157200 Sobic008G157200 Sobic003G167900--Sobic008G157200 Sobic002G412700 Sobic002G412700 Sobic003G167900--Sobic002G412700 Sobic001G250700 Sobic001G250700 Sobic003G167900--Sobic001G250700 Sobic001G248100 Sobic001G248100 Sobic003G167900--Sobic001G248100 Sobic008G000400 Sobic008G000400 Sobic003G167900--Sobic008G000400 Sobic006G035500 Sobic006G035500 Sobic003G167900--Sobic006G035500 Sobic010G206300 Sobic010G206300 Sobic003G167900--Sobic010G206300 Sobic006G073200--Sobic008G157200 Sobic004G257100 Sobic004G257100 Sobic006G073200--Sobic004G257100 Sobic001G431000 Sobic001G431000 Sobic006G073200--Sobic001G431000 Sobic001G537500 Sobic001G537500 Sobic006G073200--Sobic001G537500 Sobic001G493200 Sobic001G493200 Sobic006G073200--Sobic001G493200 Sobic008G135200 Sobic008G135200 Sobic006G073200--Sobic008G135200 Sobic006G036100 Sobic006G036100 Sobic006G073200--Sobic006G036100 Sobic004G131300 Sobic004G131300 Sobic006G073200--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic006G073200--Sobic001G251100 Sobic010G085200 Sobic010G085200 Sobic002G083900--Sobic010G085200 Sobic001G234200 Sobic001G234200 Sobic002G083900--Sobic001G234200 Sobic002G083900--Sobic003G167900 Sobic006G010000 Sobic006G010000 Sobic002G083900--Sobic006G010000 Sobic002G083900--Sobic001G251100 Sobic002G083900--Sobic006G036100 Sobic008G088806 Sobic008G088806 Sobic002G083900--Sobic008G088806 Sobic009G238850 Sobic009G238850 Sobic002G083900--Sobic009G238850 Sobic004G086700 Sobic004G086700 Sobic002G083900--Sobic004G086700 Sobic008G157200--Sobic006G073200 Sobic006G127600 Sobic006G127600 Sobic008G157200--Sobic006G127600 Sobic008G157200--Sobic004G131300 Sobic009G084900 Sobic009G084900 Sobic008G157200--Sobic009G084900 Sobic003G314700 Sobic003G314700 Sobic008G157200--Sobic003G314700 Sobic007G162100 Sobic007G162100 Sobic008G157200--Sobic007G162100 Sobic003G405500 Sobic003G405500 Sobic008G157200--Sobic003G405500 Sobic008G157200--Sobic001G248100 Sobic001G404600 Sobic001G404600 Sobic008G157200--Sobic001G404600 Sobic002G412700--Sobic001G248100 Sobic002G412700--Sobic003G405500 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic001G155400 Sobic001G155400 Sobic001G250700--Sobic001G155400 Sobic010G237900 Sobic010G237900 Sobic001G250700--Sobic010G237900 Sobic009G228000 Sobic009G228000 Sobic001G250700--Sobic009G228000 Sobic010G145800 Sobic010G145800 Sobic001G250700--Sobic010G145800 Sobic001G250700--Sobic001G248100 Sobic009G107300 Sobic009G107300 Sobic001G250700--Sobic009G107300 Sobic001G250700--Sobic008G000400 Sobic010G204900 Sobic010G204900 Sobic001G250700--Sobic010G204900 Sobic006G039400 Sobic006G039400 Sobic001G250700--Sobic006G039400 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic008G000400--Sobic001G250700 Sobic008G000400--Sobic008G157200 Sobic008G000400--Sobic003G167900 Sobic008G000400--Sobic006G073200 Sobic010G100800 Sobic010G100800 Sobic008G000400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic008G000400--Sobic004G171200 Sobic002G218500 Sobic002G218500 Sobic008G000400--Sobic002G218500 Sobic002G291400 Sobic002G291400 Sobic008G000400--Sobic002G291400 Sobic007G046500 Sobic007G046500 Sobic008G000400--Sobic007G046500 Sobic006G035500--Sobic002G412700 Sobic007G114000 Sobic007G114000 Sobic006G035500--Sobic007G114000 Sobic010G188000 Sobic010G188000 Sobic006G035500--Sobic010G188000 Sobic006G035500--Sobic003G167900 Sobic006G035500--Sobic004G034700 Sobic006G035500--Sobic006G073200 Sobic004G275600 Sobic004G275600 Sobic006G035500--Sobic004G275600 Sobic007G106700 Sobic007G106700 Sobic006G035500--Sobic007G106700 Sobic007G071900 Sobic007G071900 Sobic006G035500--Sobic007G071900 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic007G054800 Sobic007G054800 Sobic010G206300--Sobic007G054800 Sobic010G206300--Sobic003G405500 Sobic010G206300--Sobic009G084900 Sobic001G455800 Sobic001G455800 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600
Octagon: transcription factors


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