Gene annotation
Transcriptome id Sobic.002G353300.1
Synonym GGPS1, Sb02g037510
Functional annotation Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os) (PubMedID : 27208977)
polyprenyl synthetase, putative, expressed
UniProt C5XCF6
Pfam PF00348
Panther DB PTHR12001 PTHR12001:SF52
NCBI CDD KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
KEGG Orthology K13789; geranylgeranyl diphosphate synthase, type II
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G36810 : geranylgeranyl pyrophosphate synthase 1
RAP-DB (Rice) LOC_Os07g39270.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a048510 , Zm00025a014998
Brachypodium KQK15532
Barley HORVU6Hr1G018080.1 , HORVU2Hr1G036800.3
Wheat TraesCS2D02G199700 , TraesCS2A02G187900 , TraesCS2B02G219400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
2 Sobic.003G324700 expressed protein -
3 Sobic.003G386300 expressed protein -
4 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
5 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
6 Sobic.001G291900 expressed protein -
7 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
8 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
9 Sobic.002G198000 CRR6, putative, expressed -
10 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
11 Sobic.001G104800 expressed protein -
12 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
13 Sobic.002G251400 expressed protein -
14 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -
15 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
16 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
17 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
18 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
19 Sobic.002G152800 RNA recognition motif containing protein, putative, expressed -
20 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -


Gene co-expression network
sample Sobic002G353300 Sobic002G353300 Sobic001G122400 Sobic001G122400 Sobic002G353300--Sobic001G122400 Sobic003G324700 Sobic003G324700 Sobic002G353300--Sobic003G324700 Sobic003G386300 Sobic003G386300 Sobic002G353300--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic002G353300--Sobic004G311100 Sobic004G335800 Sobic004G335800 Sobic002G353300--Sobic004G335800 Sobic001G291900 Sobic001G291900 Sobic002G353300--Sobic001G291900 Sobic004G044200 Sobic004G044200 Sobic002G353300--Sobic004G044200 Sobic001G527100 Sobic001G527100 Sobic002G353300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic002G353300--Sobic002G198000 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G324700--Sobic003G386300 Sobic003G432500 Sobic003G432500 Sobic003G324700--Sobic003G432500 Sobic003G324700--Sobic001G527100 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic001G040000 Sobic001G040000 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic008G112300 Sobic008G112300 Sobic004G311100--Sobic008G112300 Sobic007G143700 Sobic007G143700 Sobic004G311100--Sobic007G143700 Sobic004G311100--Sobic003G386300 Sobic004G311100--Sobic004G335800 Sobic004G311100--Sobic001G122400 Sobic004G311100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G311100--Sobic004G116100 Sobic003G328200 Sobic003G328200 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic001G291900--Sobic001G368500 Sobic001G104800 Sobic001G104800 Sobic001G291900--Sobic001G104800 Sobic003G085000 Sobic003G085000 Sobic001G291900--Sobic003G085000 Sobic004G336000 Sobic004G336000 Sobic001G291900--Sobic004G336000 Sobic005G002900 Sobic005G002900 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G309300 Sobic001G309300 Sobic001G291900--Sobic001G309300 Sobic001G291900--Sobic006G055800 Sobic006G106400 Sobic006G106400 Sobic001G291900--Sobic006G106400 Sobic009G001500 Sobic009G001500 Sobic004G044200--Sobic009G001500 Sobic007G013400 Sobic007G013400 Sobic004G044200--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic004G044200--Sobic003G295800 Sobic001G541300 Sobic001G541300 Sobic004G044200--Sobic001G541300 Sobic007G185100 Sobic007G185100 Sobic004G044200--Sobic007G185100 Sobic004G044200--Sobic003G328200 Sobic005G218600 Sobic005G218600 Sobic004G044200--Sobic005G218600 Sobic005G218201 Sobic005G218201 Sobic004G044200--Sobic005G218201 Sobic004G044200--Sobic003G386300 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200 Sobic002G198000--Sobic004G164100 Sobic002G198000--Sobic001G527100 Sobic002G198000--Sobic001G122400 Sobic002G198000--Sobic003G386300 Sobic002G198000--Sobic001G240000 Sobic002G198000--Sobic004G335800 Sobic002G198000--Sobic001G469933 Sobic002G251400 Sobic002G251400 Sobic002G198000--Sobic002G251400 Sobic002G198000--Sobic010G095200
Octagon: transcription factors


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