Gene annotation
Transcriptome id Sobic.002G152800.1
Synonym Sb02g018650
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X861
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G52150 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os09g10760.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a046190
Brachypodium KQJ89659
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G152800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G324700 expressed protein -
2 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
3 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
4 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
5 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
6 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
7 Sobic.007G090400 expressed protein -
8 Sobic.002G214600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
9 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
10 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
11 Sobic.001G104800 expressed protein -
12 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
13 Sobic.003G386300 expressed protein -
14 Sobic.006G021600 uncharacterized membrane protein, putative, expressed -
15 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
16 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.002G271700 rhodanese-like domain containing protein, putative, expressed -
18 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
19 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
20 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -


Gene co-expression network
sample Sobic002G152800 Sobic002G152800 Sobic003G324700 Sobic003G324700 Sobic002G152800--Sobic003G324700 Sobic004G335800 Sobic004G335800 Sobic002G152800--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic002G152800--Sobic006G055800 Sobic001G469933 Sobic001G469933 Sobic002G152800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic002G152800--Sobic001G368500 Sobic003G432500 Sobic003G432500 Sobic002G152800--Sobic003G432500 Sobic007G090400 Sobic007G090400 Sobic002G152800--Sobic007G090400 Sobic002G214600 Sobic002G214600 Sobic002G152800--Sobic002G214600 Sobic001G122400 Sobic001G122400 Sobic002G152800--Sobic001G122400 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic003G324700--Sobic006G055800 Sobic003G324700--Sobic002G152800 Sobic003G386300 Sobic003G386300 Sobic003G324700--Sobic003G386300 Sobic003G324700--Sobic003G432500 Sobic001G527100 Sobic001G527100 Sobic003G324700--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic001G391400 Sobic001G391400 Sobic004G335800--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic004G335800--Sobic001G240000 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic006G055800--Sobic002G152800 Sobic001G083100 Sobic001G083100 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400 Sobic001G469933--Sobic001G122400 Sobic001G469933--Sobic001G368500 Sobic001G469933--Sobic003G324700 Sobic003G077400 Sobic003G077400 Sobic001G469933--Sobic003G077400 Sobic001G469933--Sobic006G055800 Sobic001G469933--Sobic003G432500 Sobic001G469933--Sobic004G335800 Sobic001G469933--Sobic001G083100 Sobic001G469933--Sobic005G110400 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G368500--Sobic001G469933 Sobic001G368500--Sobic001G122400 Sobic008G073100 Sobic008G073100 Sobic001G368500--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic005G143500 Sobic005G143500 Sobic001G368500--Sobic005G143500 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic003G432500--Sobic002G152800 Sobic007G090400--Sobic003G324700 Sobic007G090400--Sobic002G152800 Sobic007G090400--Sobic001G368500 Sobic007G090400--Sobic006G055800 Sobic007G090400--Sobic003G271900 Sobic001G104800 Sobic001G104800 Sobic007G090400--Sobic001G104800 Sobic007G090400--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic007G090400--Sobic001G531400 Sobic007G090400--Sobic003G432500 Sobic002G214600--Sobic002G152800 Sobic007G101300 Sobic007G101300 Sobic002G214600--Sobic007G101300 Sobic002G214600--Sobic004G335800 Sobic002G013700 Sobic002G013700 Sobic002G214600--Sobic002G013700 Sobic002G214600--Sobic003G324700 Sobic002G214600--Sobic003G432500 Sobic005G110481 Sobic005G110481 Sobic002G214600--Sobic005G110481 Sobic002G214600--Sobic007G143700 Sobic002G214600--Sobic001G469933 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400
Octagon: transcription factors


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