Hb_155103_010

Information

Type -
Description -
Location Contig155103: 30-677
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155103_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_003589_010 0.0033500158 - - -
3 Hb_008948_030 0.0055158929 - - hypothetical protein RCOM_0224470 [Ricinus communis]
4 Hb_003878_160 0.0095428449 - - conserved hypothetical protein [Ricinus communis]
5 Hb_181132_010 0.0240077712 - - -
6 Hb_000757_080 0.0274911912 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
7 Hb_100821_010 0.0392913185 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
8 Hb_002928_080 0.0445508866 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
9 Hb_002392_060 0.0451923456 - - gag/pol protein [Bryonia dioica]
10 Hb_047735_010 0.05476573 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
11 Hb_001433_010 0.0733342435 - - -
12 Hb_020805_020 0.0765261399 - - -
13 Hb_002240_030 0.0860118007 - - -
14 Hb_000046_130 0.0900443244 - - Peroxidase 27 precursor, putative [Ricinus communis]
15 Hb_007809_070 0.1310632272 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022790_030 0.1500560427 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
17 Hb_002495_020 0.1521315588 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
18 Hb_001488_050 0.1757310429 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
19 Hb_001948_010 0.2926707733 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_008071_030 0.3176245675 - - -

Gene co-expression network

sample Hb_155103_010 Hb_155103_010 Hb_003589_010 Hb_003589_010 Hb_155103_010--Hb_003589_010 Hb_008948_030 Hb_008948_030 Hb_155103_010--Hb_008948_030 Hb_003878_160 Hb_003878_160 Hb_155103_010--Hb_003878_160 Hb_181132_010 Hb_181132_010 Hb_155103_010--Hb_181132_010 Hb_000757_080 Hb_000757_080 Hb_155103_010--Hb_000757_080 Hb_100821_010 Hb_100821_010 Hb_155103_010--Hb_100821_010 Hb_003589_010--Hb_008948_030 Hb_003589_010--Hb_003878_160 Hb_003589_010--Hb_181132_010 Hb_003589_010--Hb_000757_080 Hb_003589_010--Hb_100821_010 Hb_008948_030--Hb_003878_160 Hb_008948_030--Hb_181132_010 Hb_008948_030--Hb_000757_080 Hb_008948_030--Hb_100821_010 Hb_003878_160--Hb_181132_010 Hb_003878_160--Hb_000757_080 Hb_003878_160--Hb_100821_010 Hb_181132_010--Hb_000757_080 Hb_181132_010--Hb_100821_010 Hb_002928_080 Hb_002928_080 Hb_181132_010--Hb_002928_080 Hb_000757_080--Hb_100821_010 Hb_000757_080--Hb_002928_080 Hb_002392_060 Hb_002392_060 Hb_000757_080--Hb_002392_060 Hb_100821_010--Hb_002928_080 Hb_100821_010--Hb_002392_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103413 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0912846 0

CAGE analysis