Hb_000798_020

Information

Type -
Description -
Location Contig798: 8210-8503
Sequence    

Annotation

kegg
ID rcu:RCOM_1116960
description oligopeptide transporter, putative
nr
ID XP_002525323.1
description oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q9LVE0
description Protein NRT1/ PTR FAMILY 6.4 OS=Arabidopsis thaliana GN=NPF6.4 PE=1 SV=1
trembl
ID B9SH54
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_1116960 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_120 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
2 Hb_000011_130 0.0 - - lipase [Ricinus communis]
3 Hb_000046_140 0.0 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000081_070 0.0 - - -
5 Hb_000171_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000189_040 0.0 - - hypothetical protein [Trichoderma aureoviride]
7 Hb_000210_170 0.0 - - -
8 Hb_000252_010 0.0 - - -
9 Hb_000288_040 0.0 - - -
10 Hb_000300_490 0.0 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_500 0.0 - - -
12 Hb_000329_680 0.0 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
13 Hb_000401_060 0.0 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
14 Hb_000603_090 0.0 - - -
15 Hb_000700_050 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X5 [Jatropha curcas]
16 Hb_000701_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_000747_020 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_000749_210 0.0 - - PREDICTED: general transcription factor 3C polypeptide 6 isoform X3 [Jatropha curcas]
19 Hb_000762_030 0.0 - - -
20 Hb_000798_020 0.0 - - oligopeptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000005_120 Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_000005_120--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_000005_120--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_000005_120--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_000005_120--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_000005_120--Hb_000189_040 Hb_000210_170 Hb_000210_170 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.158109 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis