Hb_000029_040

Information

Type -
Description -
Location Contig29: 71126-72189
Sequence    

Annotation

kegg
ID rcu:RCOM_1282030
description hypothetical protein
nr
ID XP_002523839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SCX0
description Casparian strip membrane protein 3 OS=Ricinus communis GN=RCOM_1282030 PE=3 SV=1
trembl
ID A0A067KXZ9
description CASP-like protein OS=Jatropha curcas GN=JCGZ_04188 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casparian strip membrane protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_030 0.0 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
2 Hb_000015_110 0.0 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
3 Hb_000029_040 0.0 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000030_110 0.0 - - -
5 Hb_000034_130 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000046_470 0.0 - - glutaredoxin, grx, putative [Ricinus communis]
7 Hb_000058_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000060_140 0.0 - - -
9 Hb_000070_020 0.0 - - -
10 Hb_000084_300 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
11 Hb_000152_720 0.0 - - -
12 Hb_000172_600 0.0 - - -
13 Hb_000189_370 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_000200_250 0.0 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000204_010 0.0 - - hypothetical protein POPTR_0004s13450g [Populus trichocarpa]
16 Hb_000215_270 0.0 - - -
17 Hb_000221_020 0.0 - - -
18 Hb_000236_440 0.0 - - -
19 Hb_000254_160 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_000315_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000011_030 Hb_000011_030 Hb_000015_110 Hb_000015_110 Hb_000011_030--Hb_000015_110 Hb_000029_040 Hb_000029_040 Hb_000011_030--Hb_000029_040 Hb_000030_110 Hb_000030_110 Hb_000011_030--Hb_000030_110 Hb_000034_130 Hb_000034_130 Hb_000011_030--Hb_000034_130 Hb_000046_470 Hb_000046_470 Hb_000011_030--Hb_000046_470 Hb_000058_010 Hb_000058_010 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0387237 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis