Gene annotation
Transcriptome id Sobic.010G047700.1
Synonym SSI1, SSI, ATSS1
Functional annotation starch synthase, putative, expressed
UniProt B3TV98 , A5Y310 , B3TVI7 , B3TV21 , B3TUZ1 , B3TV87 , B3TVG2 , Q9SBL2 , B3TUR4 , B3TVE6 , B3TUU2 , A0A194YHA2 , A5Y328 , B3TV31 , B3TVN1 , B3TUX0 , A5Y3E6 , A5Y3C9 , A5Y2Z2 , B3TUR9 , A5Y3E3 , B3TUW2 , A5Y315 , B3TV60 , B3TVF7 , B3TUR3
Pfam PF00534 PF08323
Panther DB PTHR12526 PTHR12526:SF337
NCBI CDD -
KEGG Orthology K00703; starch synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24300 : Glycogen/starch synthases, ADP-glucose type
RAP-DB (Rice) LOC_Os06g06560.1 : starch synthase, putative, expressed
MaizeGDB (Corn) Zm00025a049888 , Zm00025a053736 , Zm00025a049952 , Zm00025a012905
Brachypodium KQK19495
Barley HORVU7Hr1G025390.8 , HORVU7Hr1G025390.6 , HORVU7Hr1G025390.3 , HORVU7Hr1G025390.9 , HORVU7Hr1G025390.4 , HORVU7Hr1G025390.5 , HORVU7Hr1G025390.7 , HORVU7Hr1G025390.1 , HORVU7Hr1G025390.2
Wheat TraesCS7D02G117800 , TraesCS7D02G117800 , TraesCS7B02G018600 , TraesCS7A02G120300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G047700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
2 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
3 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
4 Sobic.001G015200 S1 RNA binding domain containing protein, expressed -
5 Sobic.004G028300 expressed protein -
6 Sobic.003G370000 chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
7 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
9 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein
10 Sobic.002G159100 chlorophyll A-B binding protein, putative, expressed K14172: light-harvesting complex II chlorophyll a/b binding protein 7
11 Sobic.007G181400 TraB family protein, putative, expressed -
12 Sobic.007G130400 FAD dependent oxidoreductase, putative, expressed -
13 Sobic.001G020100 expressed protein -
14 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
15 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
16 Sobic.001G104600 expressed protein -
17 Sobic.007G166300 lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
18 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
19 Sobic.002G223700 OsRhmbd15 - Putative Rhomboid homologue, expressed -
20 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase


Gene co-expression network
sample Sobic010G047700 Sobic010G047700 Sobic006G066800 Sobic006G066800 Sobic010G047700--Sobic006G066800 Sobic004G206100 Sobic004G206100 Sobic010G047700--Sobic004G206100 Sobic006G063900 Sobic006G063900 Sobic010G047700--Sobic006G063900 Sobic001G015200 Sobic001G015200 Sobic010G047700--Sobic001G015200 Sobic004G028300 Sobic004G028300 Sobic010G047700--Sobic004G028300 Sobic003G370000 Sobic003G370000 Sobic010G047700--Sobic003G370000 Sobic001G167900 Sobic001G167900 Sobic010G047700--Sobic001G167900 Sobic008G088821 Sobic008G088821 Sobic010G047700--Sobic008G088821 Sobic004G359600 Sobic004G359600 Sobic010G047700--Sobic004G359600 Sobic002G322000 Sobic002G322000 Sobic006G066800--Sobic002G322000 Sobic006G066800--Sobic010G047700 Sobic006G066800--Sobic004G206100 Sobic004G269800 Sobic004G269800 Sobic006G066800--Sobic004G269800 Sobic006G066800--Sobic001G015200 Sobic006G066800--Sobic008G088821 Sobic006G140500 Sobic006G140500 Sobic006G066800--Sobic006G140500 Sobic004G305900 Sobic004G305900 Sobic006G066800--Sobic004G305900 Sobic002G159100 Sobic002G159100 Sobic006G066800--Sobic002G159100 Sobic004G206100--Sobic001G015200 Sobic001G436400 Sobic001G436400 Sobic004G206100--Sobic001G436400 Sobic007G166300 Sobic007G166300 Sobic004G206100--Sobic007G166300 Sobic004G206100--Sobic008G088821 Sobic007G181400 Sobic007G181400 Sobic004G206100--Sobic007G181400 Sobic005G028800 Sobic005G028800 Sobic004G206100--Sobic005G028800 Sobic004G206100--Sobic004G305900 Sobic009G119300 Sobic009G119300 Sobic004G206100--Sobic009G119300 Sobic004G206100--Sobic006G066800 Sobic004G124400 Sobic004G124400 Sobic006G063900--Sobic004G124400 Sobic006G063900--Sobic001G167900 Sobic006G063900--Sobic005G028800 Sobic006G063900--Sobic004G028300 Sobic006G063900--Sobic007G166300 Sobic006G235350 Sobic006G235350 Sobic006G063900--Sobic006G235350 Sobic006G063900--Sobic006G140500 Sobic006G063900--Sobic001G015200 Sobic007G169100 Sobic007G169100 Sobic006G063900--Sobic007G169100 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic004G028300--Sobic008G088821 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G028300--Sobic004G359600 Sobic006G108200 Sobic006G108200 Sobic004G028300--Sobic006G108200 Sobic007G161500 Sobic007G161500 Sobic003G370000--Sobic007G161500 Sobic001G289500 Sobic001G289500 Sobic003G370000--Sobic001G289500 Sobic005G056400 Sobic005G056400 Sobic003G370000--Sobic005G056400 Sobic002G370600 Sobic002G370600 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic004G305800 Sobic004G305800 Sobic003G370000--Sobic004G305800 Sobic001G020100 Sobic001G020100 Sobic003G370000--Sobic001G020100 Sobic004G238600 Sobic004G238600 Sobic003G370000--Sobic004G238600 Sobic001G076900 Sobic001G076900 Sobic003G370000--Sobic001G076900 Sobic001G167900--Sobic004G028300 Sobic001G167900--Sobic004G124400 Sobic001G167900--Sobic004G359600 Sobic001G167900--Sobic006G063900 Sobic001G167900--Sobic001G015200 Sobic001G167900--Sobic008G088821 Sobic002G351600 Sobic002G351600 Sobic001G167900--Sobic002G351600 Sobic001G167900--Sobic007G166300 Sobic007G130400 Sobic007G130400 Sobic001G167900--Sobic007G130400 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic007G173800 Sobic007G173800 Sobic004G359600--Sobic007G173800 Sobic004G359600--Sobic001G167900 Sobic008G102000 Sobic008G102000 Sobic004G359600--Sobic008G102000 Sobic004G359600--Sobic007G181400 Sobic003G378600 Sobic003G378600 Sobic004G359600--Sobic003G378600 Sobic006G265900 Sobic006G265900 Sobic004G359600--Sobic006G265900 Sobic001G005200 Sobic001G005200 Sobic004G359600--Sobic001G005200 Sobic008G172700 Sobic008G172700 Sobic004G359600--Sobic008G172700 Sobic009G140600 Sobic009G140600 Sobic004G359600--Sobic009G140600
Octagon: transcription factors


© 2022 RIKEN, All rights reserved.