Gene annotation
Transcriptome id Sobic.009G016201.1
Synonym -
Functional annotation -
UniProt A0A1Z5R0D6
Pfam PF03911
Panther DB PTHR13509 PTHR13509:SF4
NCBI CDD -
KEGG Orthology K09481; SEC61B, protein transport protein SEC61 subunit beta
Gene Ontology GO:0006886; intracellular protein transport GO:0005784Sec61 translocon complex


Orthologs (automatic annotation)
TAIR AT5G60460 : Preprotein translocase Sec, Sec61-beta subunit protein
RAP-DB (Rice) LOC_Os11g01300.1 : protein transport protein Sec61 subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a038250 , Zm00025a040895
Brachypodium KQJ92665 , KQJ89606
Barley HORVU5Hr1G048380.1 , HORVU5Hr1G048380.2 , HORVU4Hr1G025090.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
2 Sobic.007G095400 expressed protein -
3 Sobic.008G132800 expressed protein -
4 Sobic.004G172700 plant neutral invertase domain containing protein, expressed -
5 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
6 Sobic.001G037000 PHD finger protein, putative, expressed -
7 Sobic.008G161000 protein kinase domain containing protein, expressed -
8 Sobic.010G237000 coiled-coil domain-containing protein 72, putative, expressed -
9 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
10 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
11 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
12 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
13 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
14 Sobic.010G039800 expressed protein -
15 Sobic.002G282400 expressed protein -
16 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
17 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
18 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
19 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
20 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A


Gene co-expression network
sample Sobic009G016201 Sobic009G016201 Sobic002G263800 Sobic002G263800 Sobic009G016201--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic003G249800 Sobic003G249800 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic008G161800 Sobic008G161800 Sobic002G263800--Sobic008G161800 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic010G173100 Sobic010G173100 Sobic002G263800--Sobic010G173100 Sobic010G039800 Sobic010G039800 Sobic002G263800--Sobic010G039800 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic007G095400--Sobic002G263800 Sobic007G095400--Sobic009G016201 Sobic007G095400--Sobic008G161800 Sobic007G095400--Sobic010G039800 Sobic007G095400--Sobic009G180000 Sobic004G196300 Sobic004G196300 Sobic007G095400--Sobic004G196300 Sobic007G095400--Sobic001G483100 Sobic007G095400--Sobic010G173100 Sobic010G042800 Sobic010G042800 Sobic007G095400--Sobic010G042800 Sobic008G132800--Sobic010G029400 Sobic002G078400 Sobic002G078400 Sobic008G132800--Sobic002G078400 Sobic008G132800--Sobic009G016201 Sobic001G331900 Sobic001G331900 Sobic008G132800--Sobic001G331900 Sobic004G066800 Sobic004G066800 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic005G157200 Sobic005G157200 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100 Sobic004G172700--Sobic009G016201 Sobic010G144400 Sobic010G144400 Sobic004G172700--Sobic010G144400 Sobic002G282400 Sobic002G282400 Sobic004G172700--Sobic002G282400 Sobic002G261800 Sobic002G261800 Sobic004G172700--Sobic002G261800 Sobic004G172700--Sobic003G249800 Sobic007G126100 Sobic007G126100 Sobic004G172700--Sobic007G126100 Sobic004G172700--Sobic007G095400 Sobic002G328300 Sobic002G328300 Sobic004G172700--Sobic002G328300 Sobic001G064800 Sobic001G064800 Sobic004G172700--Sobic001G064800 Sobic003G249800--Sobic008G161000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic010G204600 Sobic010G204600 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic001G037000--Sobic003G181500 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic009G152200 Sobic009G152200 Sobic008G161000--Sobic009G152200 Sobic008G161000--Sobic001G037000 Sobic009G129000 Sobic009G129000 Sobic008G161000--Sobic009G129000 Sobic008G161000--Sobic009G016201 Sobic010G204300 Sobic010G204300 Sobic008G161000--Sobic010G204300 Sobic008G161000--Sobic010G204600 Sobic010G213400 Sobic010G213400 Sobic008G161000--Sobic010G213400 Sobic010G237000--Sobic009G016201 Sobic003G344600 Sobic003G344600 Sobic010G237000--Sobic003G344600 Sobic010G237000--Sobic001G037000 Sobic010G237000--Sobic002G330000 Sobic001G128400 Sobic001G128400 Sobic010G237000--Sobic001G128400 Sobic010G237000--Sobic003G249800 Sobic010G237000--Sobic002G282400 Sobic003G254800 Sobic003G254800 Sobic010G237000--Sobic003G254800 Sobic003G350300 Sobic003G350300 Sobic010G237000--Sobic003G350300 Sobic010G029400--Sobic008G132800 Sobic010G029400--Sobic002G078400 Sobic003G025200 Sobic003G025200 Sobic010G029400--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic010G029400--Sobic002G406500 Sobic002G115000 Sobic002G115000 Sobic010G029400--Sobic002G115000 Sobic010G029400--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic010G029400--Sobic008G058300 Sobic001G377800 Sobic001G377800 Sobic010G029400--Sobic001G377800 Sobic010G029400--Sobic009G016201
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.