Gene annotation
Transcriptome id Sobic.005G216800.1
Synonym
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6PTY1
Pfam PF00076
Panther DB PTHR23139 PTHR23139:SF61
NCBI CDD KOG0124; Polypyrimidine tract-binding protein PUF60 (RRM superfamily) KOG0145RNA-binding protein ELAV/HU (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G60900 : U2 snRNP auxilliary factor, large subunit, splicing factor
RAP-DB (Rice) LOC_Os11g41820.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a029128
Brachypodium KQJ87609 , PNT63164 , PNT63165 , PNT63162 , PNT63163 , KQJ87235 , KQJ87236 , KQJ87233 , KQJ87610 , KQJ87611
Barley HORVU4Hr1G029030.8 , HORVU4Hr1G029030.9 , HORVU4Hr1G029030.6 , HORVU4Hr1G029030.4 , HORVU4Hr1G029030.5 , HORVU4Hr1G029030.2 , HORVU4Hr1G029030.3 , HORVU4Hr1G029030.1 , HORVU4Hr1G029030.14 , HORVU4Hr1G029030.15 , HORVU4Hr1G029030.16 , HORVU4Hr1G029030.17 , HORVU4Hr1G029030.10 , HORVU4Hr1G029030.11 , HORVU4Hr1G029030.12 , HORVU4Hr1G029030.13 , HORVU4Hr1G029030.18 , HORVU4Hr1G029030.19 , HORVU4Hr1G029030.29 , HORVU4Hr1G029030.28 , HORVU4Hr1G029030.21 , HORVU4Hr1G029030.20 , HORVU4Hr1G029030.23 , HORVU4Hr1G029030.22 , HORVU4Hr1G029030.24 , HORVU4Hr1G029030.27 , HORVU4Hr1G029030.26
Wheat TraesCS4A02G171800 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
2 Sobic.005G123400 expressed protein -
3 Sobic.002G342300 exostosin family domain containing protein, expressed -
4 Sobic.010G237650 - -
5 Sobic.002G235900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
6 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
7 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
8 Sobic.003G194800 EF hand family protein, putative, expressed -
9 Sobic.006G170900 growth regulator related protein, putative, expressed -
10 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
11 Sobic.007G027601 - -
12 Sobic.001G242300 expressed protein -
13 Sobic.001G497000 RNA helicase SDE3, putative, expressed K18422: helicase MOV-10
14 Sobic.006G048300 - -
15 Sobic.009G000400 expressed protein -
16 Sobic.007G118050 - -
17 Sobic.004G007900 SNF2 family N-terminal domain containing protein, expressed K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.008G084401 - -
19 Sobic.003G299500 expressed protein -
20 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ


Gene co-expression network
sample Sobic005G216800 Sobic005G216800 Sobic006G237500 Sobic006G237500 Sobic005G216800--Sobic006G237500 Sobic005G123400 Sobic005G123400 Sobic005G216800--Sobic005G123400 Sobic002G342300 Sobic002G342300 Sobic005G216800--Sobic002G342300 Sobic010G237650 Sobic010G237650 Sobic005G216800--Sobic010G237650 Sobic002G235900 Sobic002G235900 Sobic005G216800--Sobic002G235900 Sobic009G102000 Sobic009G102000 Sobic005G216800--Sobic009G102000 Sobic003G397100 Sobic003G397100 Sobic005G216800--Sobic003G397100 Sobic003G194800 Sobic003G194800 Sobic005G216800--Sobic003G194800 Sobic006G170900 Sobic006G170900 Sobic005G216800--Sobic006G170900 Sobic006G237500--Sobic005G123400 Sobic003G393200 Sobic003G393200 Sobic006G237500--Sobic003G393200 Sobic007G030100 Sobic007G030100 Sobic006G237500--Sobic007G030100 Sobic010G112600 Sobic010G112600 Sobic006G237500--Sobic010G112600 Sobic004G353300 Sobic004G353300 Sobic006G237500--Sobic004G353300 Sobic001G052100 Sobic001G052100 Sobic006G237500--Sobic001G052100 Sobic001G051400 Sobic001G051400 Sobic006G237500--Sobic001G051400 Sobic006G237500--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic006G237500--Sobic004G215600 Sobic005G123400--Sobic006G237500 Sobic005G123400--Sobic010G112600 Sobic005G123400--Sobic003G393200 Sobic001G043200 Sobic001G043200 Sobic005G123400--Sobic001G043200 Sobic009G227100 Sobic009G227100 Sobic005G123400--Sobic009G227100 Sobic009G252300 Sobic009G252300 Sobic005G123400--Sobic009G252300 Sobic005G123400--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic002G342300--Sobic005G123400 Sobic002G342300--Sobic006G237500 Sobic003G432800 Sobic003G432800 Sobic002G342300--Sobic003G432800 Sobic002G342300--Sobic005G216800 Sobic002G342300--Sobic001G043200 Sobic003G113300 Sobic003G113300 Sobic002G342300--Sobic003G113300 Sobic006G112500 Sobic006G112500 Sobic002G342300--Sobic006G112500 Sobic002G342300--Sobic001G051400 Sobic002G342300--Sobic003G393200 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic006G144000 Sobic006G144000 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic006G215100 Sobic006G215100 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic005G128000 Sobic005G128000 Sobic010G237650--Sobic005G128000 Sobic010G237650--Sobic009G102000 Sobic004G007900 Sobic004G007900 Sobic002G235900--Sobic004G007900 Sobic003G299500 Sobic003G299500 Sobic002G235900--Sobic003G299500 Sobic008G080500 Sobic008G080500 Sobic002G235900--Sobic008G080500 Sobic002G079100 Sobic002G079100 Sobic002G235900--Sobic002G079100 Sobic001G448100 Sobic001G448100 Sobic002G235900--Sobic001G448100 Sobic002G235900--Sobic009G102000 Sobic004G106250 Sobic004G106250 Sobic002G235900--Sobic004G106250 Sobic009G000400 Sobic009G000400 Sobic002G235900--Sobic009G000400 Sobic003G016500 Sobic003G016500 Sobic002G235900--Sobic003G016500 Sobic008G149800 Sobic008G149800 Sobic009G102000--Sobic008G149800 Sobic002G317400 Sobic002G317400 Sobic009G102000--Sobic002G317400 Sobic009G040800 Sobic009G040800 Sobic009G102000--Sobic009G040800 Sobic004G122900 Sobic004G122900 Sobic009G102000--Sobic004G122900 Sobic002G147100 Sobic002G147100 Sobic009G102000--Sobic002G147100 Sobic002G063900 Sobic002G063900 Sobic009G102000--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic009G102000--Sobic009G129600 Sobic007G147400 Sobic007G147400 Sobic009G102000--Sobic007G147400 Sobic009G102000--Sobic003G299500 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic002G123600 Sobic002G123600 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic008G169400 Sobic008G169400 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200 Sobic008G085950 Sobic008G085950 Sobic003G194800--Sobic008G085950 Sobic008G047500 Sobic008G047500 Sobic003G194800--Sobic008G047500 Sobic009G120400 Sobic009G120400 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic002G173400 Sobic002G173400 Sobic003G194800--Sobic002G173400 Sobic003G194800--Sobic003G299500 Sobic007G105700 Sobic007G105700 Sobic003G194800--Sobic007G105700 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic006G170900--Sobic005G123400 Sobic003G124600 Sobic003G124600 Sobic006G170900--Sobic003G124600 Sobic006G170900--Sobic003G113300 Sobic007G034200 Sobic007G034200 Sobic006G170900--Sobic007G034200 Sobic006G103700 Sobic006G103700 Sobic006G170900--Sobic006G103700 Sobic002G292800 Sobic002G292800 Sobic006G170900--Sobic002G292800 Sobic006G170900--Sobic003G194800 Sobic006G170900--Sobic004G106250 Sobic006G170900--Sobic006G237500
Octagon: transcription factors


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