Gene annotation
Transcriptome id Sobic.002G397900.2,Sobic.002G397900.1
Synonym Sb02g041260, DECOY
Functional annotation 39S ribosomal protein L46, mitochondrial precursor, putative, expressed
UniProt C5X3Z5 , C5X419
Pfam PF11788
Panther DB PTHR13124
NCBI CDD KOG4548; Mitochondrial ribosomal protein L17
KEGG Orthology K17427; large subunit ribosomal protein L46
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14620 : decoy
RAP-DB (Rice) LOC_Os06g19640.1 : 39S ribosomal protein L46, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050551
Brachypodium KQK18533
Barley HORVU7Hr1G095500.25 , HORVU7Hr1G095500.26 , HORVU4Hr1G049950.1 , HORVU7Hr1G095500.42 , HORVU7Hr1G095500.40 , HORVU7Hr1G045140.2 , HORVU7Hr1G045140.1 , HORVU7Hr1G095500.39 , HORVU7Hr1G095440.1
Wheat TraesCS7B02G126800 , TraesCS7B02G126800 , TraesCS7D02G221500 , TraesCS7D02G221500
Populus -


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cDNA sequences
Sobic.002G397900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
2 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
3 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.004G074600 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.002G213900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
6 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
7 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
8 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
9 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
11 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.002G389600 transcription regulator, putative, expressed -
13 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
14 Sobic.002G362500 expressed protein -
15 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
16 Sobic.007G039200 MYB family transcription factor, putative, expressed -
17 Sobic.003G284100 expressed protein -
18 Sobic.003G211800 expressed protein -
19 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
20 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein


Gene co-expression network
sample Sobic002G397900 Sobic002G397900 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic003G089100 Sobic003G089100 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G397900--Sobic003G201500 Sobic004G279200 Sobic004G279200 Sobic003G349900--Sobic004G279200 Sobic006G267100 Sobic006G267100 Sobic003G349900--Sobic006G267100 Sobic004G038500 Sobic004G038500 Sobic003G349900--Sobic004G038500 Sobic009G242600 Sobic009G242600 Sobic003G349900--Sobic009G242600 Sobic006G070564 Sobic006G070564 Sobic003G349900--Sobic006G070564 Sobic002G389600 Sobic002G389600 Sobic003G349900--Sobic002G389600 Sobic003G211800 Sobic003G211800 Sobic003G349900--Sobic003G211800 Sobic001G414650 Sobic001G414650 Sobic003G349900--Sobic001G414650 Sobic002G362500 Sobic002G362500 Sobic003G349900--Sobic002G362500 Sobic001G280500--Sobic002G414800 Sobic001G149000 Sobic001G149000 Sobic001G280500--Sobic001G149000 Sobic005G063200 Sobic005G063200 Sobic001G280500--Sobic005G063200 Sobic001G384200 Sobic001G384200 Sobic001G280500--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic010G160300 Sobic010G160300 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic006G265800 Sobic006G265800 Sobic001G280500--Sobic006G265800 Sobic003G089100--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic003G089100--Sobic003G013700 Sobic003G260600 Sobic003G260600 Sobic003G089100--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic003G089100--Sobic001G400000 Sobic002G420600 Sobic002G420600 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic003G089100--Sobic001G356200 Sobic004G074600--Sobic002G389600 Sobic007G039200 Sobic007G039200 Sobic004G074600--Sobic007G039200 Sobic006G171600 Sobic006G171600 Sobic004G074600--Sobic006G171600 Sobic004G250800 Sobic004G250800 Sobic004G074600--Sobic004G250800 Sobic004G074600--Sobic008G166100 Sobic004G062200 Sobic004G062200 Sobic004G074600--Sobic004G062200 Sobic001G135800 Sobic001G135800 Sobic004G074600--Sobic001G135800 Sobic004G074600--Sobic002G414800 Sobic004G074600--Sobic004G279200 Sobic006G134500 Sobic006G134500 Sobic002G213900--Sobic006G134500 Sobic002G213900--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic002G213900--Sobic009G178400 Sobic003G385300 Sobic003G385300 Sobic002G213900--Sobic003G385300 Sobic002G213900--Sobic004G113600 Sobic001G387300 Sobic001G387300 Sobic002G213900--Sobic001G387300 Sobic002G213900--Sobic008G166100 Sobic002G213900--Sobic002G389600 Sobic002G213900--Sobic006G265800 Sobic002G414800--Sobic001G384200 Sobic002G414800--Sobic008G166100 Sobic002G414800--Sobic001G280500 Sobic002G414800--Sobic006G265800 Sobic002G414800--Sobic006G134500 Sobic002G414800--Sobic001G400000 Sobic004G007400 Sobic004G007400 Sobic002G414800--Sobic004G007400 Sobic002G414800--Sobic001G387300 Sobic002G414800--Sobic002G362500 Sobic002G054700--Sobic002G397900 Sobic002G259700 Sobic002G259700 Sobic002G054700--Sobic002G259700 Sobic004G116400 Sobic004G116400 Sobic002G054700--Sobic004G116400 Sobic002G054700--Sobic002G255400 Sobic002G054700--Sobic003G089100 Sobic002G054700--Sobic003G201500 Sobic006G041800 Sobic006G041800 Sobic002G054700--Sobic006G041800 Sobic001G188000 Sobic001G188000 Sobic002G054700--Sobic001G188000 Sobic002G054700--Sobic003G260600 Sobic001G356200--Sobic004G113600 Sobic001G356200--Sobic001G400000 Sobic001G356200--Sobic003G385300 Sobic001G356200--Sobic007G039200 Sobic001G356200--Sobic001G424800 Sobic004G107100 Sobic004G107100 Sobic001G356200--Sobic004G107100 Sobic001G356200--Sobic003G089100 Sobic003G117800 Sobic003G117800 Sobic001G356200--Sobic003G117800 Sobic001G356200--Sobic006G134500 Sobic003G201500--Sobic003G089100 Sobic003G201500--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic003G201500--Sobic003G372200 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic001G378800 Sobic001G378800 Sobic003G201500--Sobic001G378800 Sobic006G120900 Sobic006G120900 Sobic003G201500--Sobic006G120900 Sobic003G201500--Sobic001G400000 Sobic003G201500--Sobic004G038500
Octagon: transcription factors


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