Gene annotation
Transcriptome id Sobic.002G357800.2,Sobic.002G357800.1
Synonym Sb02g037890, SGR7, SHR
Functional annotation SHR, putative, expressed
UniProt C5XD31
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009956; radial pattern formation GO:0008356asymmetric cell division GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G37650 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os07g39820.1 : SHR, putative, expressed
MaizeGDB (Corn) Zm00025a048577 , Zm00025a003008 , Zm00025a015051
Brachypodium KQK15471
Barley HORVU2Hr1G035730.4 , HORVU2Hr1G035730.5 , HORVU2Hr1G035730.2 , HORVU2Hr1G035730.3 , HORVU2Hr1G035730.1 , HORVU2Hr1G035720.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G357800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G154200 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
2 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
3 Sobic.003G020200 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.003G236600 expressed protein -
5 Sobic.001G455100 expressed protein -
6 Sobic.006G201000 WRKY37, expressed -
7 Sobic.001G314000 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.009G074500 expressed protein -
9 Sobic.008G157000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
10 Sobic.008G135300 thaumatin family domain containing protein, expressed -
11 Sobic.010G138300 DUF617 domain containing protein, expressed -
12 Sobic.001G522700 no apical meristem protein, putative, expressed -
13 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.008G099100 expressed protein -
15 Sobic.010G031700 thaumatin, putative, expressed -
16 Sobic.004G165300 Cupin domain containing protein, expressed -
17 Sobic.006G085700 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
18 Sobic.006G079300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.002G158900 AMP-binding domain containing protein, expressed -
20 Sobic.003G228700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -


Gene co-expression network
sample Sobic002G357800 Sobic002G357800 Sobic007G154200 Sobic007G154200 Sobic002G357800--Sobic007G154200 Sobic006G003100 Sobic006G003100 Sobic002G357800--Sobic006G003100 Sobic003G020200 Sobic003G020200 Sobic002G357800--Sobic003G020200 Sobic003G236600 Sobic003G236600 Sobic002G357800--Sobic003G236600 Sobic001G455100 Sobic001G455100 Sobic002G357800--Sobic001G455100 Sobic006G201000 Sobic006G201000 Sobic002G357800--Sobic006G201000 Sobic001G314000 Sobic001G314000 Sobic002G357800--Sobic001G314000 Sobic009G074500 Sobic009G074500 Sobic002G357800--Sobic009G074500 Sobic008G157000 Sobic008G157000 Sobic002G357800--Sobic008G157000 Sobic007G154200--Sobic001G455100 Sobic007G154200--Sobic006G003100 Sobic008G099100 Sobic008G099100 Sobic007G154200--Sobic008G099100 Sobic003G322100 Sobic003G322100 Sobic007G154200--Sobic003G322100 Sobic007G154200--Sobic009G074500 Sobic010G031700 Sobic010G031700 Sobic007G154200--Sobic010G031700 Sobic008G135300 Sobic008G135300 Sobic007G154200--Sobic008G135300 Sobic006G079300 Sobic006G079300 Sobic007G154200--Sobic006G079300 Sobic007G154200--Sobic003G020200 Sobic003G000100 Sobic003G000100 Sobic006G003100--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic006G003100--Sobic010G152400 Sobic006G003100--Sobic010G031700 Sobic004G106100 Sobic004G106100 Sobic006G003100--Sobic004G106100 Sobic007G086300 Sobic007G086300 Sobic006G003100--Sobic007G086300 Sobic002G233200 Sobic002G233200 Sobic006G003100--Sobic002G233200 Sobic004G322100 Sobic004G322100 Sobic006G003100--Sobic004G322100 Sobic004G306900 Sobic004G306900 Sobic006G003100--Sobic004G306900 Sobic007G158800 Sobic007G158800 Sobic006G003100--Sobic007G158800 Sobic003G319400 Sobic003G319400 Sobic003G020200--Sobic003G319400 Sobic010G148800 Sobic010G148800 Sobic003G020200--Sobic010G148800 Sobic003G020200--Sobic004G306900 Sobic003G020200--Sobic006G003100 Sobic001G438200 Sobic001G438200 Sobic003G020200--Sobic001G438200 Sobic006G174300 Sobic006G174300 Sobic003G020200--Sobic006G174300 Sobic003G020200--Sobic006G079300 Sobic003G020200--Sobic010G152400 Sobic003G020200--Sobic010G031700 Sobic008G102800 Sobic008G102800 Sobic003G236600--Sobic008G102800 Sobic006G028500 Sobic006G028500 Sobic003G236600--Sobic006G028500 Sobic003G140700 Sobic003G140700 Sobic003G236600--Sobic003G140700 Sobic009G199001 Sobic009G199001 Sobic003G236600--Sobic009G199001 Sobic003G236600--Sobic004G322100 Sobic001G238000 Sobic001G238000 Sobic003G236600--Sobic001G238000 Sobic002G094600 Sobic002G094600 Sobic003G236600--Sobic002G094600 Sobic004G110700 Sobic004G110700 Sobic003G236600--Sobic004G110700 Sobic003G236600--Sobic004G306900 Sobic001G455100--Sobic007G154200 Sobic001G455100--Sobic008G099100 Sobic001G455100--Sobic008G135300 Sobic001G455100--Sobic010G148800 Sobic001G522700 Sobic001G522700 Sobic001G455100--Sobic001G522700 Sobic001G455100--Sobic003G322100 Sobic002G365550 Sobic002G365550 Sobic001G455100--Sobic002G365550 Sobic010G096400 Sobic010G096400 Sobic001G455100--Sobic010G096400 Sobic009G221500 Sobic009G221500 Sobic001G455100--Sobic009G221500 Sobic004G271800 Sobic004G271800 Sobic006G201000--Sobic004G271800 Sobic003G183300 Sobic003G183300 Sobic006G201000--Sobic003G183300 Sobic008G035800 Sobic008G035800 Sobic006G201000--Sobic008G035800 Sobic010G082000 Sobic010G082000 Sobic006G201000--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic006G201000--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic006G201000--Sobic006G135300 Sobic004G322000 Sobic004G322000 Sobic006G201000--Sobic004G322000 Sobic007G090600 Sobic007G090600 Sobic006G201000--Sobic007G090600 Sobic003G240400 Sobic003G240400 Sobic006G201000--Sobic003G240400 Sobic001G314000--Sobic003G183300 Sobic009G079900 Sobic009G079900 Sobic001G314000--Sobic009G079900 Sobic001G514300 Sobic001G514300 Sobic001G314000--Sobic001G514300 Sobic003G426200 Sobic003G426200 Sobic001G314000--Sobic003G426200 Sobic007G206800 Sobic007G206800 Sobic001G314000--Sobic007G206800 Sobic002G391400 Sobic002G391400 Sobic001G314000--Sobic002G391400 Sobic005G052700 Sobic005G052700 Sobic001G314000--Sobic005G052700 Sobic002G334000 Sobic002G334000 Sobic001G314000--Sobic002G334000 Sobic006G205700 Sobic006G205700 Sobic001G314000--Sobic006G205700 Sobic004G322800 Sobic004G322800 Sobic009G074500--Sobic004G322800 Sobic009G074500--Sobic009G199001 Sobic002G042200 Sobic002G042200 Sobic009G074500--Sobic002G042200 Sobic009G074500--Sobic010G148800 Sobic004G209400 Sobic004G209400 Sobic009G074500--Sobic004G209400 Sobic009G074500--Sobic009G221500 Sobic009G074500--Sobic003G020200 Sobic003G282200 Sobic003G282200 Sobic009G074500--Sobic003G282200 Sobic010G138300 Sobic010G138300 Sobic009G074500--Sobic010G138300 Sobic008G157000--Sobic002G357800 Sobic008G157000--Sobic003G236600 Sobic001G250100 Sobic001G250100 Sobic008G157000--Sobic001G250100 Sobic004G165300 Sobic004G165300 Sobic008G157000--Sobic004G165300 Sobic003G003700 Sobic003G003700 Sobic008G157000--Sobic003G003700 Sobic008G157000--Sobic003G426200 Sobic001G112800 Sobic001G112800 Sobic008G157000--Sobic001G112800 Sobic010G218300 Sobic010G218300 Sobic008G157000--Sobic010G218300 Sobic008G157000--Sobic002G094600
Octagon: transcription factors


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