Gene annotation
Transcriptome id Sobic.002G198300.1,Sobic.002G198300.2
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XC73
Pfam PF13920 PF10269
Panther DB PTHR10044
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68820 : Transmembrane Fragile-X-F-associated protein
RAP-DB (Rice) LOC_Os03g49900.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046937
Brachypodium KQJ90191 , KQJ90192 , PNT64539
Barley HORVU5Hr1G061250.10 , HORVU5Hr1G061250.33 , HORVU5Hr1G061250.32 , HORVU5Hr1G061250.26 , HORVU5Hr1G061250.24 , HORVU5Hr1G061250.25 , HORVU5Hr1G061250.22 , HORVU5Hr1G061250.23 , HORVU5Hr1G061250.21
Wheat TraesCS5A02G207100 , TraesCS5A02G207100 , TraesCS5B02G205500 , TraesCS5D02G213300 , TraesCS5D02G213300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
2 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
3 Sobic.007G103400 expressed protein -
4 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
5 Sobic.010G125833 - -
6 Sobic.001G504400 expressed protein -
7 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
8 Sobic.003G306200 hemimethylated DNA binding domain containing protein, expressed -
9 Sobic.001G536700 expressed protein -
10 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
11 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
12 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
13 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
14 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
15 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.009G038701 - -
17 Sobic.002G072500 expressed protein -
18 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
19 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
20 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -


Gene co-expression network
sample Sobic002G198300 Sobic002G198300 Sobic002G298800 Sobic002G298800 Sobic002G198300--Sobic002G298800 Sobic001G393300 Sobic001G393300 Sobic002G198300--Sobic001G393300 Sobic007G103400 Sobic007G103400 Sobic002G198300--Sobic007G103400 Sobic001G368600 Sobic001G368600 Sobic002G198300--Sobic001G368600 Sobic010G125833 Sobic010G125833 Sobic002G198300--Sobic010G125833 Sobic001G504400 Sobic001G504400 Sobic002G198300--Sobic001G504400 Sobic001G378100 Sobic001G378100 Sobic002G198300--Sobic001G378100 Sobic003G306200 Sobic003G306200 Sobic002G198300--Sobic003G306200 Sobic001G536700 Sobic001G536700 Sobic002G198300--Sobic001G536700 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic004G103300 Sobic004G103300 Sobic002G298800--Sobic004G103300 Sobic002G298800--Sobic007G103400 Sobic006G097500 Sobic006G097500 Sobic002G298800--Sobic006G097500 Sobic002G298800--Sobic001G368600 Sobic003G094100 Sobic003G094100 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300 Sobic001G393300--Sobic002G298800 Sobic007G166300 Sobic007G166300 Sobic001G393300--Sobic007G166300 Sobic001G509200 Sobic001G509200 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic001G393300--Sobic003G094100 Sobic007G108900 Sobic007G108900 Sobic001G393300--Sobic007G108900 Sobic001G393300--Sobic002G198300 Sobic007G135800 Sobic007G135800 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic009G237000 Sobic009G237000 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic001G368600--Sobic004G103300 Sobic001G368600--Sobic006G097500 Sobic001G368600--Sobic002G298800 Sobic001G368600--Sobic001G393300 Sobic001G368600--Sobic007G135800 Sobic001G368600--Sobic002G072500 Sobic001G368600--Sobic002G198300 Sobic001G368600--Sobic007G166300 Sobic006G025500 Sobic006G025500 Sobic001G368600--Sobic006G025500 Sobic009G038701 Sobic009G038701 Sobic010G125833--Sobic009G038701 Sobic010G125833--Sobic001G504400 Sobic002G206300 Sobic002G206300 Sobic010G125833--Sobic002G206300 Sobic008G033000 Sobic008G033000 Sobic010G125833--Sobic008G033000 Sobic010G125833--Sobic002G198300 Sobic003G185900 Sobic003G185900 Sobic010G125833--Sobic003G185900 Sobic008G129900 Sobic008G129900 Sobic010G125833--Sobic008G129900 Sobic010G125833--Sobic002G298800 Sobic001G180200 Sobic001G180200 Sobic010G125833--Sobic001G180200 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G258200 Sobic001G258200 Sobic001G504400--Sobic001G258200 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G378100--Sobic001G504400 Sobic001G077300 Sobic001G077300 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200 Sobic003G306200--Sobic007G103400 Sobic003G398800 Sobic003G398800 Sobic003G306200--Sobic003G398800 Sobic003G306200--Sobic002G275300 Sobic003G306200--Sobic002G298800 Sobic003G306200--Sobic002G198300 Sobic003G306200--Sobic010G035400 Sobic009G056700 Sobic009G056700 Sobic003G306200--Sobic009G056700 Sobic006G238200 Sobic006G238200 Sobic003G306200--Sobic006G238200 Sobic006G142600 Sobic006G142600 Sobic003G306200--Sobic006G142600 Sobic001G536700--Sobic002G206300 Sobic001G536700--Sobic001G378100 Sobic001G536700--Sobic001G180200 Sobic001G536700--Sobic003G094100 Sobic003G341300 Sobic003G341300 Sobic001G536700--Sobic003G341300 Sobic001G345100 Sobic001G345100 Sobic001G536700--Sobic001G345100 Sobic001G536700--Sobic001G077300 Sobic001G536700--Sobic001G504400 Sobic001G536700--Sobic007G135800
Octagon: transcription factors


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