Gene annotation
Transcriptome id Sobic.001G076200.1
Synonym Sb01g006880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized protein ycf44, putative, expressed
UniProt C5WZ85
Pfam PF05140
Panther DB PTHR31566 PTHR31566:SF0
NCBI CDD -
KEGG Orthology K07399; resB, cytochrome c biogenesis protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G49380 : cytochrome c biogenesis protein family
RAP-DB (Rice) LOC_Os03g55970.1 : uncharacterized protein ycf44, putative, expressed
MaizeGDB (Corn) Zm00025a008332
Brachypodium KQK12999
Barley HORVU5Hr1G070670.2 , HORVU5Hr1G070670.1 , HORVU5Hr1G098370.1 , HORVU5Hr1G098370.2 , HORVU5Hr1G098370.3 , HORVU5Hr1G098370.4
Wheat TraesCS5D02G414900 , TraesCS5B02G409700 , TraesCS5B02G409700 , TraesCS5A02G404800 , TraesCS5A02G404800
Populus -


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cDNA sequences
Sobic.001G076200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G246800 pentatricopeptide, putative, expressed -
2 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
3 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
4 Sobic.003G114100 expressed protein -
5 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
6 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
7 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
8 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G055600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -
10 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
11 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
12 Sobic.005G022800 GTP binding protein, putative, expressed -
13 Sobic.009G136900 peptide transporter PTR2, putative, expressed -
14 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
15 Sobic.004G151900 - -
16 Sobic.008G131700 PsbP, putative, expressed -
17 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
18 Sobic.008G177850 - -
19 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G388400 expressed protein -


Gene co-expression network
sample Sobic001G076200 Sobic001G076200 Sobic004G246800 Sobic004G246800 Sobic001G076200--Sobic004G246800 Sobic003G030400 Sobic003G030400 Sobic001G076200--Sobic003G030400 Sobic001G537700 Sobic001G537700 Sobic001G076200--Sobic001G537700 Sobic003G114100 Sobic003G114100 Sobic001G076200--Sobic003G114100 Sobic009G233800 Sobic009G233800 Sobic001G076200--Sobic009G233800 Sobic004G249500 Sobic004G249500 Sobic001G076200--Sobic004G249500 Sobic008G021700 Sobic008G021700 Sobic001G076200--Sobic008G021700 Sobic002G114700 Sobic002G114700 Sobic001G076200--Sobic002G114700 Sobic004G055600 Sobic004G055600 Sobic001G076200--Sobic004G055600 Sobic004G246800--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic004G246800--Sobic002G209600 Sobic008G131700 Sobic008G131700 Sobic004G246800--Sobic008G131700 Sobic004G246800--Sobic008G021700 Sobic005G022800 Sobic005G022800 Sobic004G246800--Sobic005G022800 Sobic004G151900 Sobic004G151900 Sobic004G246800--Sobic004G151900 Sobic001G514100 Sobic001G514100 Sobic004G246800--Sobic001G514100 Sobic005G197300 Sobic005G197300 Sobic004G246800--Sobic005G197300 Sobic004G255500 Sobic004G255500 Sobic004G246800--Sobic004G255500 Sobic003G222600 Sobic003G222600 Sobic003G030400--Sobic003G222600 Sobic008G148400 Sobic008G148400 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic003G030400--Sobic001G076200 Sobic009G238100 Sobic009G238100 Sobic003G030400--Sobic009G238100 Sobic009G137000 Sobic009G137000 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic003G030400--Sobic004G249500 Sobic003G039300 Sobic003G039300 Sobic001G537700--Sobic003G039300 Sobic001G537700--Sobic001G076200 Sobic006G110200 Sobic006G110200 Sobic001G537700--Sobic006G110200 Sobic007G205600 Sobic007G205600 Sobic001G537700--Sobic007G205600 Sobic007G069400 Sobic007G069400 Sobic001G537700--Sobic007G069400 Sobic001G388400 Sobic001G388400 Sobic001G537700--Sobic001G388400 Sobic001G537700--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic001G537700--Sobic010G028000 Sobic001G537700--Sobic002G114700 Sobic003G114100--Sobic002G114700 Sobic003G114100--Sobic001G076200 Sobic008G078900 Sobic008G078900 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic007G201400 Sobic007G201400 Sobic003G114100--Sobic007G201400 Sobic003G114100--Sobic008G131700 Sobic006G273400 Sobic006G273400 Sobic003G114100--Sobic006G273400 Sobic003G114100--Sobic001G514100 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G233800--Sobic006G204100 Sobic009G233800--Sobic001G388400 Sobic009G233800--Sobic004G055600 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic009G233800--Sobic001G076200 Sobic009G233800--Sobic010G028000 Sobic004G249500--Sobic001G076200 Sobic004G249500--Sobic003G030400 Sobic008G101500 Sobic008G101500 Sobic004G249500--Sobic008G101500 Sobic004G249500--Sobic009G238100 Sobic001G426400 Sobic001G426400 Sobic004G249500--Sobic001G426400 Sobic008G177850 Sobic008G177850 Sobic004G249500--Sobic008G177850 Sobic004G249500--Sobic004G246800 Sobic004G249500--Sobic003G114100 Sobic005G009300 Sobic005G009300 Sobic004G249500--Sobic005G009300 Sobic008G021700--Sobic004G151900 Sobic009G251300 Sobic009G251300 Sobic008G021700--Sobic009G251300 Sobic008G021700--Sobic005G022800 Sobic008G021700--Sobic004G246800 Sobic008G021700--Sobic001G076200 Sobic008G021700--Sobic002G209600 Sobic001G142400 Sobic001G142400 Sobic008G021700--Sobic001G142400 Sobic005G077933 Sobic005G077933 Sobic008G021700--Sobic005G077933 Sobic001G061600 Sobic001G061600 Sobic008G021700--Sobic001G061600 Sobic002G114700--Sobic008G078900 Sobic002G114700--Sobic003G114100 Sobic002G114700--Sobic006G273400 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic002G114700--Sobic007G205600 Sobic004G055600--Sobic009G233800 Sobic002G004000 Sobic002G004000 Sobic004G055600--Sobic002G004000 Sobic004G055600--Sobic001G076200 Sobic001G255400 Sobic001G255400 Sobic004G055600--Sobic001G255400 Sobic009G136900 Sobic009G136900 Sobic004G055600--Sobic009G136900 Sobic004G055600--Sobic001G388400 Sobic009G253000 Sobic009G253000 Sobic004G055600--Sobic009G253000 Sobic004G055600--Sobic008G177850 Sobic004G055600--Sobic008G101500
Octagon: transcription factors


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