Hb_000125_160

Information

Type -
Description -
Location Contig125: 177294-185019
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000004_150 0.0 - - hypothetical protein RCOM_1382630 [Ricinus communis]
2 Hb_000007_170 0.0 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
3 Hb_000010_280 0.0 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
4 Hb_000022_220 0.0 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
5 Hb_000045_120 0.0 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
6 Hb_000056_320 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_000066_110 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
8 Hb_000072_270 0.0 - - JHL22C18.10 [Jatropha curcas]
9 Hb_000078_110 0.0 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
10 Hb_000081_190 0.0 - - -
11 Hb_000082_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105164525 [Sesamum indicum]
12 Hb_000085_430 0.0 - - -
13 Hb_000092_110 0.0 - - catalytic, putative [Ricinus communis]
14 Hb_000093_120 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000120_110 0.0 - - 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Ricinus communis]
16 Hb_000125_160 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000127_060 0.0 - - -
18 Hb_000128_020 0.0 - - -
19 Hb_000130_300 0.0 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000152_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000004_150 Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_000004_150--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000004_150--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000004_150--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_000004_150--Hb_000045_120 Hb_000056_320 Hb_000056_320 Hb_000004_150--Hb_000056_320 Hb_000066_110 Hb_000066_110 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00465987 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis