Hb_000086_260

Information

Type transcription factor
Description TF Family: GRAS
Location Contig86: 215869-217428
Sequence    

Annotation

kegg
ID rcu:RCOM_0259850
description DELLA protein GAIP, putative
nr
ID XP_002529844.1
description DELLA protein GAIP, putative [Ricinus communis]
swissprot
ID Q9M384
description Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1
trembl
ID B9SV25
description DELLA protein GAIP, putative OS=Ricinus communis GN=RCOM_0259850 PE=4 SV=1
Gene Ontology
ID GO:0006351
description protein scarecrow-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000006_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000015_240 0.0 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000016_090 0.0 - - -
4 Hb_000016_240 0.0 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
5 Hb_000028_020 0.0 - - -
6 Hb_000028_300 0.0 - - hypothetical protein 0_13835_01, partial [Pinus radiata]
7 Hb_000031_310 0.0 transcription factor TF Family: Orphans hypothetical protein [Trichormus azollae]
8 Hb_000037_100 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000045_030 0.0 - - -
10 Hb_000048_130 0.0 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_000056_050 0.0 - - PREDICTED: uncharacterized protein LOC104117826 [Nicotiana tomentosiformis]
12 Hb_000070_150 0.0 - - hypothetical protein POPTR_0004s19980g [Populus trichocarpa]
13 Hb_000077_340 0.0 - - -
14 Hb_000080_040 0.0 - - -
15 Hb_000086_260 0.0 transcription factor TF Family: GRAS DELLA protein GAIP, putative [Ricinus communis]
16 Hb_000086_650 0.0 - - Putative methyltransferase family protein [Solanum demissum]
17 Hb_000104_020 0.0 - - hypothetical protein POPTR_0019s01630g [Populus trichocarpa]
18 Hb_000115_130 0.0 - - PREDICTED: zinc finger protein JAGGED [Populus euphratica]
19 Hb_000117_200 0.0 - - PREDICTED: protein RTF2 homolog [Populus euphratica]
20 Hb_000157_160 0.0 - - PREDICTED: LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]

Gene co-expression network

sample Hb_000006_020 Hb_000006_020 Hb_000015_240 Hb_000015_240 Hb_000006_020--Hb_000015_240 Hb_000016_090 Hb_000016_090 Hb_000006_020--Hb_000016_090 Hb_000016_240 Hb_000016_240 Hb_000006_020--Hb_000016_240 Hb_000028_020 Hb_000028_020 Hb_000006_020--Hb_000028_020 Hb_000028_300 Hb_000028_300 Hb_000006_020--Hb_000028_300 Hb_000031_310 Hb_000031_310 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0195032 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis