Hb_000022_030

Information

Type -
Description -
Location Contig22: 53546-57940
Sequence    

Annotation

kegg
ID tcc:TCM_003129
description hypothetical protein
nr
ID XP_007049889.1
description Uncharacterized protein TCM_003129 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DPN0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003129 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_470 0.0 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
2 Hb_000003_630 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_000004_050 0.0 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
4 Hb_000007_350 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000010_490 0.0 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
6 Hb_000017_170 0.0 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
7 Hb_000017_240 0.0 - - -
8 Hb_000022_030 0.0 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
9 Hb_000022_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000023_070 0.0 - - hypothetical protein, partial [Cecembia lonarensis]
11 Hb_000024_060 0.0 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
12 Hb_000027_250 0.0 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
13 Hb_000031_360 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000037_130 0.0 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
15 Hb_000042_320 0.0 - - unnamed protein product [Coffea canephora]
16 Hb_000042_400 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Nicotiana tomentosiformis]
17 Hb_000054_150 0.0 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_000054_170 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000069_060 0.0 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
20 Hb_000069_180 0.0 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_470 Hb_000002_470 Hb_000003_630 Hb_000003_630 Hb_000002_470--Hb_000003_630 Hb_000004_050 Hb_000004_050 Hb_000002_470--Hb_000004_050 Hb_000007_350 Hb_000007_350 Hb_000002_470--Hb_000007_350 Hb_000010_490 Hb_000010_490 Hb_000002_470--Hb_000010_490 Hb_000017_170 Hb_000017_170 Hb_000002_470--Hb_000017_170 Hb_000017_240 Hb_000017_240 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.362635

CAGE analysis